@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0302: (2015-12-30 )
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]
119 HHSearch 90.4635%-121 - C1 -3RLF - MALK_ECOLI -
115 HHSearch 90.0238%-129 - C1 -2YYZ - ? -
117 HHSearch 89.7636%-112 - C1 -1Z47 - ? -
116 HHSearch 89.6237%-121 - C1 -2IT1 - ? -
114 HHSearch 89.6139%-115 - C1 -1V43 - ? -
103 Fugue 88.3436%-113 - C1 -1Z47 - ? -
21 PsiBlast_CBE 86.0838%-116 - C1 -1Z47 - ? -
104 Fugue 85.5732%-113 - C1 -1OXS - ? -
7 PsiBlast_PDB 84.9639%-122 - C1 -4TQV - ? -
121 HHSearch 84.8232%-111 - C1 -1OXX - ? -
6 PsiBlast_PDB 84.6839%-119 - C1 -4TQU - ? -
1 PsiBlast_PDB 83.9738%-112 - C1 -1Z47 - ? -
4 PsiBlast_PDB 82.3740%-124 - C1 -2YYZ - ? -
8 PsiBlast_PDB 80.1638%-110 - C1 -2D62 - ? -
42 PsiBlast_CBE 78.6335%-119 - C1 -1OXV - ? -
43 PsiBlast_CBE 77.8935%-117 - C1 -1OXV - ? -
44 PsiBlast_CBE 77.5035%-115 - C1 -1OXV - ? -
47 PsiBlast_CBE 77.3435%-117 - C1 -1OXU - ? -
48 PsiBlast_CBE 77.0235%-116 - C1 -1OXS - ? -
46 PsiBlast_CBE 77.0035%-119 - C1 -1OXU - ? -
64 PsiBlast_CBE 64.9233%-111 - C1 -4YMU 6.3 ?
65 PsiBlast_CBE 64.3533%-113 - C1 -4YMU 5.9 ?
62 PsiBlast_CBE 64.2333%-112 - C1 -4YMV 5.6 ?
63 PsiBlast_CBE 63.8333%-110 - C1 -4YMV 5.1 ?
74 PsiBlast_CBE 63.6834%-114 - C1 -4U00 5.9 ?
77 PsiBlast_CBE 63.4034%-113 - C1 -3C4J 4.8 ?
86 PsiBlast_CBE 62.7234%-112 - C1 -2OLK 6.0 ?
90 PsiBlast_CBE 62.5734%-114 - C1 -2OLJ 6.0 ?
75 PsiBlast_CBE 62.5034%-113 - C1 -3C41 5.8 ?
76 PsiBlast_CBE 62.4634%-110 - C1 -3C41 6.6 ?
87 PsiBlast_CBE 62.1034%-109 - C1 -2OLK 5.8 ?
126 HHSearch 62.0333%-108 * C1 *2OLJ 6.0 ?
88 PsiBlast_CBE 61.9934%-110 - C1 -2OLK 5.7 ?
85 PsiBlast_CBE 61.5034%-109 - C1 -2OLK 5.9 ?
78 PsiBlast_CBE 61.1234%-114 - C1 -3C4J 6.5 ?
98 PsiBlast_CBE 61.1034%-111 - C1 -1B0U 4.1 HISP_SALTY
79 PsiBlast_CBE 60.1734%-105 - C1 -2Q0H 5.7 ?
80 PsiBlast_CBE 60.1334%-112 - C1 -2Q0H 5.3 ?
89 PsiBlast_CBE 60.0034%-108 - C1 -2OLJ 5.7 ?