@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0326: (2015-12-31 )
MTSAIAIERICMEFGTPGQGLKALDDVSLDIHANEFFTLLGPSGCGKTTLLRLIAGFEQPSSGSIRLYGEHMEGLPPFRRPVNTVFQSYALFPHMSVADNIGFGLEMQGRPRSEIDATVSRMLDLVKLPEVGKRRADQLSGGQQQRIALARALASRPKVLLLDESLSALDLKLRKEMQIELKRLQHETGITFIFVTHDQEEALTMSDRIAVMSKGKVLQVGTPSDIYEAPLNRAVADFIGETNFLEGQADADGVRLADGQRLAATTPGSGAVTLAIRPERTELAADGQLEGVLENIVYVGTDTVYHLNVAGQPGFRVRQQNRDGARCPHSPGAKVRVRIPAAAIRVLAE

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]
1 PsiBlast_PDB 95.8140%-117 - C2 -1V43 - ? -
103 HHSearch 95.5741%-114 - C2 -1V43 - ? -
2 PsiBlast_PDB 94.8140%-115 - C2 -1VCI - ? -
104 HHSearch 94.0440%-112 - C2 -2IT1 - ? -
109 HHSearch 89.7939%-108 - C2 -2YYZ - ? -
4 PsiBlast_PDB 87.7840%-105 - C2 -1Z47 - ? -
22 PsiBlast_CBE 87.0840%-103 - C2 -1Z47 - ? -
110 HHSearch 86.5537%-112 - C2 -3RLF - MALK_ECOLI -
108 HHSearch 86.2238%-105 - C2 -1Z47 - ? -
21 PsiBlast_CBE 83.9443%-120 - C2 -2IT1 - ? -
3 PsiBlast_PDB 83.6743%-116 - C2 -2IT1 - ? -
124 Fugue 83.4135%-106 - C2 -1Z47 - ? -
5 PsiBlast_PDB 82.7742%-109 - C2 -2D62 - ? -
111 HHSearch 80.7934% -97 - C2 -1OXX - ? -
105 HHSearch 79.5736%-100 - C2 -3D31 - ? -
24 PsiBlast_CBE 78.0041%-101 - C2 -3RLF - MALK_ECOLI -
36 PsiBlast_CBE 77.7242%-103 - C2 -2YYZ - ? -
34 PsiBlast_CBE 77.6341%-103 - C2 -2R6G - MALK_ECOLI (first) -
14 PsiBlast_PDB 77.5341% -99 - C2 -3PUV - MALK_ECOLI -
17 PsiBlast_PDB 77.4941%-103 - C2 -3RLF - MALK_ECOLI -
71 PsiBlast_CBE 63.7134%-105 - C2 -2OLK 5.9 ?
61 PsiBlast_CBE 63.5834%-108 - C2 -3C4J 4.7 ?
75 PsiBlast_CBE 63.4234%-109 - C2 -3C41 6.1 ?
69 PsiBlast_CBE 62.2834%-103 - C2 -2OLK 6.0 ?
74 PsiBlast_CBE 62.0434%-107 - C2 -2OLJ 6.2 ?
70 PsiBlast_CBE 62.0134%-107 - C2 -2OLK 6.1 ?
72 PsiBlast_CBE 61.1934%-106 - C2 -2OLK 6.1 ?
63 PsiBlast_CBE 61.1034%-104 - C2 -2Q0H 5.7 ?
64 PsiBlast_CBE 60.8434%-104 - C2 -2Q0H 5.4 ?
73 PsiBlast_CBE 60.7734%-103 - C2 -2OLJ 5.8 ?
76 PsiBlast_CBE 60.4834%-106 - C2 -3C41 6.7 ?
62 PsiBlast_CBE 60.3534%-104 - C2 -3C4J 6.6 ?
80 PsiBlast_CBE 60.0533%-108 - C2 -4YMU 6.1 ?
77 PsiBlast_CBE 59.8233%-108 - C2 -4YMV 4.7 ?
85 PsiBlast_CBE 59.8033%-109 - C2 -4U00 6.1 ?
79 PsiBlast_CBE 59.6733%-108 - C2 -4YMU 6.3 ?
78 PsiBlast_CBE 59.1933%-105 - C2 -4YMV 6.2 ?