@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0374: (2016-01-02 )
MIRFEQVGKRYPNGHVGLHEVSFRVHRGEILFVTGHSGAGKSTLLRLILAMERPTSGKLLLGGQDLGRITTAQIPFLRRQIGVVFQNHQLLTDRTVADNIALPLQILGMPKPEIAKRVASALERVNLKEKGEALPSDLSTGQQQRVGIARAIVHQPALLLADEPTGNLDPRLASEIMGVFEDINRLGTTVLIASHDLALIARMRHRMLTLQRGRIIADREDEA

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




102 HHSearch 91.1340%-117 * C1 *3TUI - METN_ECOLI -
122 Fugue 90.9840%-120 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 89.3740%-124 - C1 -3TUI - METN_ECOLI -
5 PsiBlast_PDB 89.0136%-116 - C1 -2PCJ - LOLD_AQUAE -
27 PsiBlast_CBE 88.3736%-121 - C1 -2PCJ - LOLD_AQUAE -
125 Fugue 88.3435%-115 - C1 -1Z47 - ? -
6 PsiBlast_PDB 88.3336%-117 - C1 -2PCL - LOLD_AQUAE -
24 PsiBlast_CBE 88.2640%-125 - C1 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 88.2240%-129 - C1 -3TUZ - METN_ECOLI -
118 HHSearch 87.2836%-114 - C1 -2PCJ - LOLD_AQUAE -
1 PsiBlast_PDB 87.2041%-120 - C1 -3DHW - METN_ECOLI -
22 PsiBlast_CBE 86.7240%-121 - C1 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 86.6540%-122 - C1 -3TUI - METN_ECOLI -
23 PsiBlast_CBE 86.2440%-122 - C1 -3TUZ - METN_ECOLI -
25 PsiBlast_CBE 86.0340%-122 - C1 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 85.8540%-125 - C1 -3TUZ - METN_ECOLI -
28 PsiBlast_CBE 84.1636%-126 - C1 -1Z47 - ? -
101 HHSearch 84.0736%-116 - C1 -1Z47 - ? -
7 PsiBlast_PDB 82.9736%-125 - C1 -1Z47 - ? -
11 PsiBlast_PDB 82.7236%-116 - C1 -1OXS - ? -
17 PsiBlast_PDB 81.8433%-121 - C1 -4YMU 6.0 ?
35 PsiBlast_CBE 81.2933%-124 - C1 -4YMU 6.0 ?
34 PsiBlast_CBE 79.6233%-121 - C1 -4YMV 5.1 ?
46 PsiBlast_CBE 77.3232%-115 - C1 -2OLK 6.4 ?
120 HHSearch 76.2133%-118 - C1 -1B0U 5.9 HISP_SALTY
51 PsiBlast_CBE 75.9432%-116 - C1 -2OLJ 5.8 ?
47 PsiBlast_CBE 75.4232%-114 - C1 -2OLK 6.2 ?
48 PsiBlast_CBE 75.3732%-112 - C1 -2OLK 6.4 ?
49 PsiBlast_CBE 74.7532%-114 - C1 -2OLK 6.1 ?
36 PsiBlast_CBE 74.5332%-113 - C1 -3C41 6.0 ?
41 PsiBlast_CBE 74.5232%-112 - C1 -2Q0H 5.7 ?
38 PsiBlast_CBE 74.1932%-116 - C1 -3C4J 5.3 ?
116 HHSearch 73.5733%-113 - C1 -2OLJ 6.1 ?
39 PsiBlast_CBE 73.2732%-112 - C1 -3C4J 6.8 ?
37 PsiBlast_CBE 72.5332%-110 - C1 -3C41 6.7 ?
50 PsiBlast_CBE 72.4332%-112 - C1 -2OLJ 6.0 ?
40 PsiBlast_CBE 72.4132%-115 - C1 -2Q0H 6.1 ?
107 HHSearch 72.1131%-107 - C1 -3FVQ 7.1 FBPC_NEIG1
65 PsiBlast_CBE 71.8534%-119 - C1 -1B0U 5.9 HISP_SALTY
58 PsiBlast_CBE 71.2533%-118 - C1 -4U00 6.2 ?
100 PsiBlast_CBE 66.0733%-122 - C1 -4HLU 3.7 ECFA2_THEMA