@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0400: (2016-01-03 )
MSQHDQHPDAPAQAFATRVIHAGQAPDPSTGAIMPPIYANSTYIQESPGVHKGLDYGRSHNPTRWALERCVADLEGGTQAFAFASGLAAISSVLELLDAGSHIVSGNDLYGGTFRLFERVRRRSAGHRFSFVDPTDLQAFEAALTPETRMVWVETPSNPLLRLTDLRAIAQLCRARGIISVADNTFASPYIQRPLELGFDVVVHSTTKYLNGHSDVIGGIAIVGDNPDLRERLGFLQNSVGAISGPFDAFLTLRGVKTLALRMERHCSNALALAQWLERQPQVARVYYPGLASHPQHELAKRQMRGFGGMISLDLRCDLAGARRFLENVRIFSLAESLGGVESLIEHPAIMTHASIPAETRADLGIGDSLIRLSVGVEALEDLQADLAQALAKI

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLG_A_2(4HF8)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



LCS_A_2(4OMA)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PLP_B_8(1E5F)
?
[Raw transfer]



PLP_A_3(1E5F)
?
[Raw transfer]



PPJ_B_7(1E5E)
?
[Raw transfer]



PZP_A_2(3MKJ)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



NLE_A_2(3JWB)
?
[Raw transfer]



PLP_C_13(1IBJ)
METC_ARATH
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



MPJ_A_2(3JWA)
?
[Raw transfer]



ECX_A_2(3JW9)
?
[Raw transfer]
23 PsiBlast_CBE 97.0166%-105 - C1 -4IY7 - ? -
1 PsiBlast_PDB 96.6366%-103 - C1 -4IY7 - ? -
2 PsiBlast_PDB 96.6266%-104 - C1 -4IYO - ? -
22 PsiBlast_CBE 96.2166%-105 - C1 -4IY7 - ? -
21 PsiBlast_CBE 95.7666%-104 - C1 -4IY7 - ? -
3 PsiBlast_PDB 92.3766%-106 - C1 -3E6G - ? -
4 PsiBlast_PDB 90.8052%-102 - C1 -4L0O - METB_HELPY -
35 PsiBlast_CBE 90.0652%-104 - C1 -2NMP - CGL_HUMAN -
26 PsiBlast_CBE 89.7952%-103 - C1 -4L0O - METB_HELPY -
25 PsiBlast_CBE 89.7852%-106 - C1 -4L0O - METB_HELPY -
5 PsiBlast_PDB 89.6752%-106 - C1 -2NMP - CGL_HUMAN -
31 PsiBlast_CBE 89.5552%-103 - C1 -3COG - CGL_HUMAN -
34 PsiBlast_CBE 89.3752%-100 - C1 -2NMP - CGL_HUMAN -
32 PsiBlast_CBE 89.0852%-104 - C1 -3COG - CGL_HUMAN -
10 PsiBlast_PDB 88.8247%-103 - C1 -4OMA 6.4 ?
15 PsiBlast_PDB 88.5147%-101 - C1 -3JWB 2.0 ?
14 PsiBlast_PDB 88.5047%-100 - C1 -3JWA 2.2 ?
29 PsiBlast_CBE 88.4052%-102 - C1 -4L0O - METB_HELPY -
6 PsiBlast_PDB 88.3752%-105 - C1 -3COG - CGL_HUMAN -
13 PsiBlast_PDB 88.3647%-101 - C1 -3JW9 3.4 ?
12 PsiBlast_PDB 88.1247%-101 - C1 -4HF8 6.1 ?
11 PsiBlast_PDB 87.0347%-102 - C1 -3MKJ 4.9 ?
69 PsiBlast_CBE 83.9741% -98 - C1 -1E5F 3.8 ?
71 PsiBlast_CBE 83.7641%-100 - C1 -1E5E 4.8 ?
72 PsiBlast_CBE 83.1541% -99 - C1 -1E5E 5.4 ?
107 HHSearch 83.1341% -98 - C1 -1E5E 5.4 ?
70 PsiBlast_CBE 82.6141% -98 - C1 -1E5F 3.8 ?
103 HHSearch 82.4741%-100 - C1 -1IBJ 4.0 METC_ARATH
68 PsiBlast_CBE 80.2342%-101 - C1 -1IBJ 4.0 METC_ARATH
67 PsiBlast_CBE 79.6642%-100 - C1 -1IBJ 3.4 METC_ARATH
115 HHSearch 78.1846%-106 - C1 -1PFF 2.0 ?
108 HHSearch 77.0140% -93 - C1 -2CTZ 4.7 ?