@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0428: (2016-01-04 )
MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEEFLDDDFDNFGNRADYVSPYQGQENKGRGRRGGQQKPQGGTGQQGRGQGQGQARGKSQGAAQGGARGQGAGQGKAKKPRAGKPRGQGRENASRMSDAPLREPSEYGTGKQPSRQPVVINKRDLVRMDRFPTAEQLDELEPRRKGERPALLTRNR

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8OD_A_6(3NBF)
?
[Raw transfer]



8OD_C_11(3NBF)
?
[Raw transfer]



8OD_D_13(3NBF)
?
[Raw transfer]



8OD_B_8(3NBF)
?
[Raw transfer]



GOL_D_5(4D25)
?
[Raw transfer]



GOL_B_10(2GXS)
?
[Raw transfer]



NACID_H_4(2DB3)
VASA1_DROME
[Raw transfer]
-
TLA_B_4(1VEC)
DDX6_HUMAN
[Raw transfer]



NACID_D_2(4D26)
?
[Raw transfer]
-
NACID_D_2(4D25)
?
[Raw transfer]
-
NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_F_2(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_G_3(2DB3)
VASA1_DROME
[Raw transfer]
-
5 PsiBlast_PDB 89.5039%-100 - C3 -4D26 12.1 ?
4 PsiBlast_PDB 89.4539%-102 - C3 -4D25 12.1 ?
2 PsiBlast_PDB 88.8541%-121 - C3 -2I4I - DDX3X_HUMAN -
109 HHSearch 88.1939%-118 - C3 -2I4I - DDX3X_HUMAN -
25 PsiBlast_CBE 87.2843%-115 - C3 -4KBF - ? -
24 PsiBlast_CBE 87.2243%-104 - C3 -4KBG - ? -
1 PsiBlast_PDB 87.0137%-102 - C3 -2DB3 11.9 VASA1_DROME
21 PsiBlast_CBE 86.7337%-102 - C3 -2DB3 11.5 VASA1_DROME
22 PsiBlast_CBE 86.5637%-102 - C3 -2DB3 11.3 VASA1_DROME
23 PsiBlast_CBE 86.3337%-101 - C3 -2DB3 10.4 VASA1_DROME
102 HHSearch 85.9437%-106 - C3 -2DB3 11.7 VASA1_DROME
6 PsiBlast_PDB 85.6243%-101 - C3 -4KBF - ? -
42 PsiBlast_CBE 85.0933%-105 - C3 -3PEY - DBP5_YEAST -
40 PsiBlast_CBE 85.0933%-113 - C3 -3RRM - DBP5_YEAST -
39 PsiBlast_CBE 85.0333%-111 - C3 -3RRN - DBP5_YEAST -
41 PsiBlast_CBE 84.6133%-105 - C3 -3PEW - DBP5_YEAST -
35 PsiBlast_CBE 84.4931%-123 - C3 -2VSX - IF4A_YEAST -
36 PsiBlast_CBE 84.2931%-123 - C3 -2VSX - IF4A_YEAST -
10 PsiBlast_PDB 84.2734%-104 - C3 -2XB2 - IF4A3_HUMAN -
38 PsiBlast_CBE 84.1431%-123 - C3 -2VSO - IF4A_YEAST -
50 PsiBlast_CBE 67.4744%-124 - C3 -3NBF 5.3 ?
52 PsiBlast_CBE 67.4544%-119 - C3 -3NBF 5.0 ?
49 PsiBlast_CBE 67.4344%-127 - C3 -3NBF 5.4 ?
51 PsiBlast_CBE 67.0744%-114 - C3 -3NBF 5.8 ?
46 PsiBlast_CBE 66.9745%-120 - C3 -2GXS 2.4 ?
69 PsiBlast_CBE 59.9435%-110 - C3 -1VEC 2.5 DDX6_HUMAN