@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0455: (2016-01-05 )
MTSTAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAWYALGQLKASPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIERGLAHQALKRLSEGKIKGRSFKVRLL

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8OD_B_7(3NBF)
?
[Raw transfer]



ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]



8OP_C_10(3NBF)
?
[Raw transfer]



ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]



ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]



ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]



AMP_A_2(2GXQ)
?
[Raw transfer]



ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]



AMP_A_8(2GXS)
?
[Raw transfer]



AMP_B_9(2GXS)
?
[Raw transfer]



8OP_B_6(3MWK)
?
[Raw transfer]



AMP_A_3(4KBF)
?
[Raw transfer]



8OX_B_6(3MWL)
?
[Raw transfer]



ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]



8OP_D_12(3NBF)
?
[Raw transfer]



8OD_A_5(3NBF)
?
[Raw transfer]



AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]



FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]



FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]
1 PsiBlast_PDB 91.8139%-127 - C4 -1HV8 - H669_METJA -
108 HHSearch 91.0739%-119 - C4 -1HV8 - H669_METJA -
110 HHSearch 90.4637%-126 - C4 -2I4I - DDX3X_HUMAN -
37 PsiBlast_CBE 90.1134%-139 - C4 -2VSO - IF4A_YEAST -
36 PsiBlast_CBE 90.0034%-140 - C4 -2VSO - IF4A_YEAST -
14 PsiBlast_PDB 89.8036%-130 - C4 -2I4I - DDX3X_HUMAN -
34 PsiBlast_CBE 89.3434%-138 - C4 -2VSX - IF4A_YEAST -
35 PsiBlast_CBE 89.1234%-138 - C4 -2VSX - IF4A_YEAST -
28 PsiBlast_CBE 88.9142%-126 - C4 -4KBF - ? -
11 PsiBlast_PDB 88.8742%-115 - C4 -4KBF 5.3 ?
17 PsiBlast_PDB 88.6735%-114 - C4 -4PXA - DDX3X_HUMAN -
27 PsiBlast_CBE 88.0342%-117 - C4 -4KBG - ? -
100 HHSearch 86.7534%-123 - C4 -3EIQ - IF4A1_HUMAN -
15 PsiBlast_PDB 86.6635%-112 - C4 -4D25 - ? -
103 HHSearch 86.4336%-104 - C4 -2DB3 - VASA1_DROME -
32 PsiBlast_CBE 86.0932%-132 - C4 -1XTI - DX39B_HUMAN -
5 PsiBlast_PDB 85.6334%-126 - C4 -2HXY - IF4A3_HUMAN -
8 PsiBlast_PDB 85.5935%-120 - C4 -2J0U - IF4A3_HUMAN -
16 PsiBlast_PDB 85.3935%-108 - C4 -4D26 - ? -
26 PsiBlast_CBE 85.2132%-122 - C4 -4CT4 - DDX6_HUMAN -
107 HHSearch 83.0732%-114 - C4 -3FHT 7.3 DD19B_HUMAN
64 PsiBlast_CBE 70.9539%-127 - C4 -3FE2 6.1 DDX5_HUMAN
65 PsiBlast_CBE 70.8239%-128 - C4 -3FE2 3.5 DDX5_HUMAN
47 PsiBlast_CBE 70.6346%-128 - C4 -3NBF 4.6 ?
46 PsiBlast_CBE 70.1346%-134 - C4 -3NBF 4.7 ?
50 PsiBlast_CBE 69.9146%-131 - C4 -3MWL 4.8 ?
45 PsiBlast_CBE 69.6446%-125 - C4 -2GXQ 6.3 ?
44 PsiBlast_CBE 69.4146%-128 - C4 -2GXS 5.2 ?
49 PsiBlast_CBE 69.4046%-121 - C4 -3NBF 4.0 ?
48 PsiBlast_CBE 69.4046%-122 - C4 -3NBF 5.7 ?
52 PsiBlast_CBE 69.2146%-126 - C4 -3MWK 4.2 ?
43 PsiBlast_CBE 69.0446%-128 - C4 -2GXS 5.1 ?
66 PsiBlast_CBE 68.4938%-134 - C4 -4PX9 5.3 DDX3X_HUMAN
71 PsiBlast_CBE 68.2838%-125 - C4 -3BER 4.9 DDX47_HUMAN
73 PsiBlast_CBE 66.7935%-116 - C4 -1T6N 2.5 DX39B_HUMAN
72 PsiBlast_CBE 65.8835%-115 - C4 -1T6N 2.9 DX39B_HUMAN
70 PsiBlast_CBE 64.9239%-117 - C4 -2PL3 6.2 DDX10_HUMAN