@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0518: (2016-01-08 )
MKPYALLSLLATGTLLAQGAWAEDPEVLFKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_2(351C)
CY551_PSEAE
[Raw transfer]




HEM_A_2(451C)
CY551_PSEAE
[Raw transfer]




HEC_A_3(2EXV)
CY551_PSEAE
[Raw transfer]




HEC_A_3(2EXV)
CY551_PSEAE
[Raw transfer]




HEC_C_4(2EXV)
CY551_PSEAE
[Raw transfer]




HEC_A_2(4JCG)
CY552_NITEU
[Raw transfer]




HEC_D_11(1YNR)
CY552_HYDTT
[Raw transfer]




HEC_A_5(3ZOY)
CY552_NITEU
[Raw transfer]




HEC_B_9(1YNR)
CY552_HYDTT
[Raw transfer]




HEC_D_8(3ZOY)
CY552_NITEU
[Raw transfer]




HEC_A_2(2D0S)
?
[Raw transfer]




HEC_C_10(1YNR)
CY552_HYDTT
[Raw transfer]




HEC_A_2(2D0S)
?
[Raw transfer]




HEM_A_2(1CCH)
CY551_PSEST
[Raw transfer]




HEC_A_8(1YNR)
CY552_HYDTT
[Raw transfer]




HEM_A_2(1CCH)
CY551_PSEST
[Raw transfer]




HEC_D_8(3ZOX)
CY552_NITEU
[Raw transfer]




HEC_B_6(3ZOY)
CY552_NITEU
[Raw transfer]




HEC_C_7(3ZOX)
CY552_NITEU
[Raw transfer]




HEC_A_5(3ZOX)
CY552_NITEU
[Raw transfer]




HEC_C_7(3ZOY)
CY552_NITEU
[Raw transfer]




HEC_B_6(3ZOX)
CY552_NITEU
[Raw transfer]




HEM_A_2(2PAC)
CY551_PSEAE
[Raw transfer]




HEM_A_2(1COR)
CY551_PSEST
[Raw transfer]




HEC_A_3(2EXV)
CY551_PSEAE
[Raw transfer]




77 HHSearch 90.9899% -96 - C3 -2EXV 10.8 CY551_PSEAE
22 PsiBlast_CBE 89.8398% -95 - C3 -2EXV 11.1 CY551_PSEAE
5 PsiBlast_PDB 89.4498% -92 - C3 -2EXV 10.8 CY551_PSEAE
2 PsiBlast_PDB 88.84100% -91 - C3 -351C 11.2 CY551_PSEAE
3 PsiBlast_PDB 88.43100% -91 - C3 -451C 11.3 CY551_PSEAE
1 PsiBlast_PDB 83.43100% -72 - C3 -2PAC 7.3 CY551_PSEAE
21 PsiBlast_CBE 81.62100% -90 - C3 -3X39 - CY551_PSEAE -
4 PsiBlast_PDB 80.57100% -89 - C3 -3X39 - CY551_PSEAE -
78 HHSearch 76.0469% -88 - C3 -1CCH 6.2 CY551_PSEST
7 PsiBlast_PDB 75.8768% -87 - C3 -1CCH 6.2 CY551_PSEST
40 PsiBlast_CBE 71.6656% -96 - C3 -3ZOW - CY552_NITEU -
43 PsiBlast_CBE 71.4256% -97 - C3 -3ZOW - CY552_NITEU -
24 PsiBlast_CBE 71.3556% -81 - C3 -1YNR 10.7 CY552_HYDTT
23 PsiBlast_CBE 71.3056% -90 - C3 -1YNR 10.4 CY552_HYDTT
10 PsiBlast_PDB 70.8655% -93 - C3 -3ZOX 10.3 CY552_NITEU
11 PsiBlast_PDB 70.8155%-100 - C3 -3ZOY 10.0 CY552_NITEU
45 PsiBlast_CBE 70.7156% -93 - C3 -3ZOW - CY552_NITEU -
80 HHSearch 70.6251% -87 * C3 *2D0S 9.7 ?
44 PsiBlast_CBE 70.6156% -90 - C3 -3ZOW - CY552_NITEU -
25 PsiBlast_CBE 70.2656% -89 - C3 -1YNR 10.3 CY552_HYDTT
30 PsiBlast_CBE 70.1655% -86 - C3 -3ZOX 9.0 CY552_NITEU
14 PsiBlast_PDB 70.0848% -90 - C3 -2D0S 9.8 ?
31 PsiBlast_CBE 70.0055% -87 - C3 -3ZOX 11.6 CY552_NITEU
29 PsiBlast_CBE 69.5655% -97 - C3 -3ZOX 9.6 CY552_NITEU
26 PsiBlast_CBE 69.4955% -98 - C3 -3ZOY 7.9 CY552_NITEU
8 PsiBlast_PDB 69.2156% -80 - C3 -1YNR 10.0 CY552_HYDTT
28 PsiBlast_CBE 69.0855% -91 - C3 -3ZOY 9.9 CY552_NITEU
27 PsiBlast_CBE 68.2555% -89 - C3 -3ZOY 9.6 CY552_NITEU
13 PsiBlast_PDB 67.7656% -82 - C3 -4JCG 10.4 CY552_NITEU
6 PsiBlast_PDB 38.4069% 55 - C3 -1COR 1.6 CY551_PSEST