@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0551: (2016-01-09 )
MSTPPFRVALNGYGRIGRCVLRALHERPEQLGFEIVALNDLADQASVEYLTRFDSTHGRFPGEVKVDGDCLHINGDCVKVLRSPTPEAIDWQALRVDLVLECSGQYTNRAQAERFLRAGAPRVLFSQPMASEADIDATIVYGVNQQDLSGRETLVSNASCTTNCGVPLLKLLNEAIGLEYVSITTIHSAMNDQPVIDAYHHEDLRRTRSAFQSVIPVSTGLARGIERLLPELAGRIQAKAIRVPTVNVSALDITLQTSRDTSAAEINRVLREAAESGPLRGLLAYTELPHASCDFNHDPHSAIVDGSQTRVSGPRLVNLLAWFDNEWGFANRMLDVAGHYLRAAVPDQQVPKD

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(3L0D)
?
[Raw transfer]



NAD_B_4(3L0D)
?
[Raw transfer]



NAD_B_6(3ZDF)
?
[Raw transfer]



NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_A_5(3ZDF)
?
[Raw transfer]



NAD_E_5(1VC2)
?
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]
30 PsiBlast_CBE 94.5753%-117 - C3 -2XF8 - E4PD_ECOLI -
119 HHSearch 94.2752%-119 - C3 -2X5J - E4PD_ECOLI -
32 PsiBlast_CBE 94.1753%-113 - C3 -2XF8 - E4PD_ECOLI -
31 PsiBlast_CBE 94.0153%-110 - C3 -2XF8 - E4PD_ECOLI -
42 PsiBlast_CBE 92.3752%-107 - C3 -3GNQ - ? -
34 PsiBlast_CBE 92.2453%-114 - C3 -2XF8 - E4PD_ECOLI -
1 PsiBlast_PDB 92.1853%-117 - C3 -2X5J - E4PD_ECOLI -
38 PsiBlast_CBE 92.1352%-107 - C3 -3GNQ - ? -
36 PsiBlast_CBE 92.0652%-107 - C3 -3GNQ - ? -
24 PsiBlast_CBE 91.8753%-114 - C3 -2XF8 - E4PD_ECOLI -
23 PsiBlast_CBE 91.8753%-109 - C3 -2X5J - E4PD_ECOLI -
2 PsiBlast_PDB 91.7753%-110 - C3 -2XF8 - E4PD_ECOLI -
37 PsiBlast_CBE 91.7552%-105 - C3 -3GNQ - ? -
22 PsiBlast_CBE 91.2953%-108 - C3 -2X5J - E4PD_ECOLI -
33 PsiBlast_CBE 91.2453%-112 - C3 -2XF8 - E4PD_ECOLI -
21 PsiBlast_CBE 91.1353%-112 - C3 -2X5J - E4PD_ECOLI -
41 PsiBlast_CBE 90.9552%-106 - C3 -3GNQ - ? -
35 PsiBlast_CBE 90.4953%-111 - C3 -2XF8 - E4PD_ECOLI -
39 PsiBlast_CBE 90.2352%-107 - C3 -3GNQ - ? -
3 PsiBlast_PDB 90.1952%-104 - C3 -3GNQ - ? -
117 HHSearch 88.3138%-105 - C3 -1RM4 7.9 G3PA_SPIOL
5 PsiBlast_PDB 87.9049%-104 - C3 -3L0D 8.9 ?
46 PsiBlast_CBE 87.4649%-105 - C3 -3L0D 6.6 ?
93 PsiBlast_CBE 87.2641%-103 - C3 -3ZDF 9.5 ?
94 PsiBlast_CBE 86.8141%-104 - C3 -3ZDF 9.5 ?
121 HHSearch 86.7141%-102 - C3 -1HDG 10.3 G3P_THEMA
19 PsiBlast_PDB 85.1542%-105 - C3 -1VC2 9.2 ?
125 HHSearch 84.1539% -99 - C3 -2EP7 10.0 G3P_AQUAE