@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0555: (2016-01-09 )
MALISMRQMLDHAAEFGYGVPAFNVNNLEQMRAIMEAADKTDSPVIVQASAGARKYAGAPFLRHLILAAIEEFPHIPVVMHQDHGTSPDVCQRSIQLGFSSVMMDGSLREDGKTPADYDYNVRVTQQTVAFAHACGVSVEGELGCLGSLETGMAGEEDGVGAEGVLDHSQLLTDPEEAADFVKKTKVDALAIAIGTSHGAYKFTKPPTGDTLSIQRIKEIHARIPDTHLVMHGSSSVPQDWLAIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTGAIRRFLAQNPSEFDPRKYFSKTVEAMRDICIARYEAFGTAGNASKIKPISLEGMFQRYARGELDPKVN

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PH4_A_5(3C56)
ALF_HELPY
[Raw transfer]



TD4_B_10(3N9S)
?
[Raw transfer]



PH4_B_6(3C56)
ALF_HELPY
[Raw transfer]



2FP_A_2(3ELF)
ALF_MYCTU
[Raw transfer]



PGH_B_6(2ISV)
?
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



13P_A_5(2FJK)
ALF_THECA
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_5(2ISV)
?
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_B_12(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_9(3C52)
ALF_HELPY
[Raw transfer]



13P_A_8(3Q94)
?
[Raw transfer]



FLC_B_6(4TO8)
?
[Raw transfer]



FLC_A_4(4TO8)
?
[Raw transfer]
116 HHSearch 98.4448% -89 - C6 -2ISW 4.2 ?
3 PsiBlast_PDB 95.4246% -89 - C6 -2ISW 4.2 ?
2 PsiBlast_PDB 95.3946% -88 - C6 -2ISV 3.6 ?
1 PsiBlast_PDB 94.8247% -93 - C6 -3GAK - ? -
21 PsiBlast_CBE 94.2447% -87 - C6 -3GAK - ? -
22 PsiBlast_CBE 94.1546% -81 - C6 -2ISV 4.6 ?
117 HHSearch 89.4745% -83 * C6 *1RVG - ? -
32 PsiBlast_CBE 86.4738% -83 - C6 -3N9R - ? -
10 PsiBlast_PDB 86.0638% -83 - C6 -3N9R - ? -
30 PsiBlast_CBE 85.7138% -82 - C6 -3N9R - ? -
36 PsiBlast_CBE 85.6838% -86 - C6 -3C4U - ALF_HELPY -
34 PsiBlast_CBE 85.6138% -81 - C6 -3N9R - ? -
7 PsiBlast_PDB 85.4338% -86 - C6 -3C4U - ALF_HELPY -
35 PsiBlast_CBE 85.3838% -80 - C6 -3C56 5.3 ALF_HELPY
33 PsiBlast_CBE 85.3238% -80 - C6 -3N9R - ? -
31 PsiBlast_CBE 85.2738% -80 - C6 -3N9R - ? -
5 PsiBlast_PDB 85.1243% -72 - C6 -1RVG - ? -
8 PsiBlast_PDB 84.9738% -80 - C6 -3C52 4.2 ALF_HELPY
9 PsiBlast_PDB 84.8138% -80 - C6 -3C56 5.0 ALF_HELPY
29 PsiBlast_CBE 84.5438% -80 - C6 -3N9S 5.9 ?
118 HHSearch 82.6939% -89 - C6 -1GVF 3.6 KBAY_ECOLI
6 PsiBlast_PDB 82.3641% -71 - C6 -2FJK 4.5 ALF_THECA
11 PsiBlast_PDB 82.1835% -86 - C6 -4TO8 3.5 ?
37 PsiBlast_CBE 81.3235% -87 - C6 -4TO8 3.5 ?
12 PsiBlast_PDB 79.3935% -82 - C6 -1GVF 3.6 KBAY_ECOLI
38 PsiBlast_CBE 78.3435% -78 - C6 -1GVF 4.0 KBAY_ECOLI
13 PsiBlast_PDB 77.3233% -77 - C6 -3Q94 4.5 ?