@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0576: (2016-01-10 )
MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFETAPDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEVEPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALKKHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDARMPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVAEIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLDE

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_8(4OIO)
?
[Raw transfer]
-
NACID_H_8(4OIN)
?
[Raw transfer]
-
NACID_H_8(4Q5S)
?
[Raw transfer]
-
NACID_H_8(4OIP)
?
[Raw transfer]
-
NACID_H_13(4G7Z)
?
[Raw transfer]
-
NACID_H_8(4G7O)
?
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
?
[Raw transfer]
-
NACID_H_8(4OIR)
?
[Raw transfer]
-
NACID_H_8(4G7H)
?
[Raw transfer]
-
NACID_H_8(4OIQ)
?
[Raw transfer]
-
NACID_B_2(3UGP)
SIGA_THEAQ
[Raw transfer]
-
NACID_B_2(3UGO)
SIGA_THEAQ
[Raw transfer]
-
NACID_R_16(4G7H)
?
[Raw transfer]
-
NACID_R_17(4G7O)
?
[Raw transfer]
-
NACID_R_15(4G7Z)
?
[Raw transfer]
-
NACID_D_1(4KI2)
SIGA_THEAQ
[Raw transfer]
-
NACID_E_2(4KI2)
SIGA_THEAQ
[Raw transfer]
-
77 Fugue 98.2171%-100 - C5 -4LLG - RPOD_ECOLI -
6 PsiBlast_PDB 96.7266%-100 - C5 -4LLG - RPOD_ECOLI -
11 PsiBlast_PDB 90.4665% -98 - C5 -4LJZ - RPOD_ECOLI -
14 PsiBlast_PDB 90.1365% -93 - C5 -4XSY - ? -
7 PsiBlast_PDB 90.0766% -94 - C5 -4YFK - RPOD_ECOLI -
12 PsiBlast_PDB 89.9965% -90 - C5 -4LK0 - RPOD_ECOLI -
15 PsiBlast_PDB 89.8865% -96 - C5 -4XSZ - ? -
13 PsiBlast_PDB 89.8165% -95 - C5 -4XSX - ? -
10 PsiBlast_PDB 89.5766% -94 - C5 -4YG2 - RPOA_ECOLI (first) -
8 PsiBlast_PDB 89.4266% -96 - C5 -4YFN - RPOD_ECOLI -
21 PsiBlast_CBE 88.4466% -96 - C5 -4KN4 - RPOD_ECOLI -
22 PsiBlast_CBE 88.2366% -95 - C5 -4KMU - RPOD_ECOLI -
9 PsiBlast_PDB 84.9166% -82 - C5 -4YFX - RPOD_ECOLI -
16 PsiBlast_PDB 65.6852% -79 * C10 *1SIG - RPOD_ECOLI -
56 HHSearch 65.1351% -71 - C10 -1SIG - RPOD_ECOLI -
34 PsiBlast_CBE 63.6061% -69 - C5 -4OIN 12.1 ?
24 PsiBlast_CBE 63.3361% -67 - C5 -4Q4Z 11.2 ?
33 PsiBlast_CBE 62.8861% -70 - C5 -4OIO 11.2 ?
36 PsiBlast_CBE 62.6161% -69 - C5 -4G7Z 9.9 ?
31 PsiBlast_CBE 62.5261% -67 - C5 -4OIQ 11.7 ?
30 PsiBlast_CBE 62.4161% -68 - C5 -4OIR 11.3 ?
32 PsiBlast_CBE 62.3961% -68 - C5 -4OIP 12.0 ?
38 PsiBlast_CBE 62.3861% -67 - C5 -4G7O 11.8 ?
40 PsiBlast_CBE 62.1761% -68 - C5 -4G7H 11.9 ?
39 PsiBlast_CBE 61.9861% -64 - C5 -4G7H 12.1 ?
37 PsiBlast_CBE 61.9661% -67 - C5 -4G7O 11.9 ?
23 PsiBlast_CBE 61.4661% -66 - C5 -4Q5S 12.9 ?
35 PsiBlast_CBE 61.1461% -66 - C5 -4G7Z 10.4 ?
43 PsiBlast_CBE 47.9764% -55 - C5 -4KI2 13.9 SIGA_THEAQ
45 PsiBlast_CBE 44.9964% -48 - C5 -3UGP 15.1 SIGA_THEAQ
46 PsiBlast_CBE 44.8464% -49 - C5 -3UGO 15.7 SIGA_THEAQ
44 PsiBlast_CBE 43.2764% -50 - C5 -4KI2 12.3 SIGA_THEAQ