@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0580: (2016-01-10 )
MRVLGLETSCDETGVALYDSERGLLADALFSQIDLHRVYGGVVPELASRDHVKRMLPLIRQVLDESGCTPADIDAIAYTAGPGLVGALLVGASCAQAMAFAWGVPAVGVHHMEGHLLAPMLEEQPPRFPFVALLVSGGHTQLVRVDGIGRYQLLGESVDDAAGEAFDKTAKLIGLGYPGGPEIARLAERGTPGRFVFPRPMTDRPGLDFSFSGLKTFTLNTWQRCVEAGDDSEQTRCDIALAFQTAVVETLLIKCRRALKQTGLKNLVIAGGVSANQALRSGLEKMLGEMKGQVFYARPRFCTDNGAMIAYAGCQRLLAGQHDGPAISVQPRWPMESLPAV

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_14(4WQ5)
TSAD_ECOLI
[Raw transfer]




AGS_B_10(3ZEU)
?
[Raw transfer]




AGS_E_16(3ZEU)
?
[Raw transfer]




AGS_B_10(3ZEU)
?
[Raw transfer]




ATP_A_7(4WQ5)
TSAD_ECOLI
[Raw transfer]




ADP_B_12(4YDU)
TSAD_ECOLI
[Raw transfer]




ADP_A_5(4YDU)
TSAD_ECOLI
[Raw transfer]




ATP_A_6(4WQ4)
TSAD_ECOLI
[Raw transfer]




ATP_B_9(4WQ4)
TSAD_ECOLI
[Raw transfer]




AMP_B_4(3ZET)
?
[Raw transfer]




ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]




ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]




AMP_A_4(3WUH)
QRI7_YEAST
[Raw transfer]




AMP_B_6(3WUH)
QRI7_YEAST
[Raw transfer]




1 PsiBlast_PDB 96.0169%-117 - C2 -4YDU 7.0 TSAD_ECOLI
21 PsiBlast_CBE 95.8569%-118 - C2 -4YDU 6.7 TSAD_ECOLI
4 PsiBlast_PDB 95.8269%-119 - C2 -4WQ4 6.3 TSAD_ECOLI
22 PsiBlast_CBE 95.5168%-119 - C2 -3ZEU 7.3 ?
3 PsiBlast_PDB 95.4268%-117 - C2 -3ZEU 8.1 ?
5 PsiBlast_PDB 95.4169%-116 - C2 -4WQ5 7.3 TSAD_ECOLI
24 PsiBlast_CBE 94.9969%-114 - C2 -4WQ5 7.6 TSAD_ECOLI
2 PsiBlast_PDB 94.9568%-117 - C2 -3ZET 6.5 ?
23 PsiBlast_CBE 94.0569%-116 - C2 -4WQ4 6.6 TSAD_ECOLI
32 HHSearch 93.4466%-116 - C2 -3ZEU 7.0 ?
53 Fugue 73.7835% -98 - C2 -2IVN 6.9 KAE1_PYRAB
34 HHSearch 73.1434% -99 - C2 -2IVN 6.3 KAE1_PYRAB
7 PsiBlast_PDB 71.7237%-108 - C2 -2IVO - KAE1_PYRAB -
26 PsiBlast_CBE 71.4137%-109 - C2 -2IVO - KAE1_PYRAB -
8 PsiBlast_PDB 71.3537%-105 - C2 -2IVP - KAE1_PYRAB -
6 PsiBlast_PDB 71.1337%-106 - C2 -2IVN - KAE1_PYRAB -
27 PsiBlast_CBE 71.0437%-108 - C2 -2IVO - KAE1_PYRAB -
25 PsiBlast_CBE 70.7737%-110 - C2 -2IVO - KAE1_PYRAB -
10 PsiBlast_PDB 70.2530% -99 - C2 -3ENO - KAE1B_THEAC -
33 HHSearch 69.3127%-107 * C2 *3EN9 - KAE1B_METJA -
9 PsiBlast_PDB 69.2732%-109 - C2 -3WUH 5.5 QRI7_YEAST
28 PsiBlast_CBE 68.6932%-105 - C2 -3WUH 5.6 QRI7_YEAST