@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0603: (2016-01-11 )
MAETQGGDVLVSFRGVQKSYDGETLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMMLAGFETPTAGEILLAGRSINNVPPHKRDIGMVFQNYALFPHMTVAENLAFPLSVRGMSKTDVKERVKRALSMVQLDAFAGRYPAQLSGGQQQRVALARALVFEPQLVLMDEPLGALDKQLREHMQMEIKHLHQRLGVTVVYVTHDQGEALTMSDRVAVFHQGEIQQIEPPRNLYEQPRNTFVANFIGENNRLSGQLLSCDGERCVVGLPRGEKVEALAVNVGQPGEPVTLSIRPERVRLNGASESCVNRFSGRVAEFVYLGDHVRVRLEVCGRDDFFVKQPIAELDPTLSVGDVVPLGWQVEHVRALDPLPAA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(4YMU)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]
121 HHSearch 86.1641%-101 - C1 -2YYZ - ? -
110 Fugue 84.3438%-100 - C1 -1Z47 - ? -
123 HHSearch 83.8539% -94 - C1 -1Z47 - ? -
119 HHSearch 83.6742% -99 - C1 -1V43 - ? -
111 Fugue 82.7434% -94 - C1 -1OXS - ? -
126 HHSearch 80.2534% -92 - C1 -1OXX - ? -
120 HHSearch 80.1537% -96 - C1 -2IT1 - ? -
124 HHSearch 79.4836% -98 - C1 -3RLF - MALK_ECOLI -
42 PsiBlast_CBE 79.0536%-113 - C1 -1OXU - ? -
39 PsiBlast_CBE 79.0136%-115 - C1 -1OXV - ? -
46 PsiBlast_CBE 78.8736%-111 - C1 -1OXX - ? -
24 PsiBlast_CBE 78.8540%-103 - C1 -4KI0 - ? -
40 PsiBlast_CBE 78.6736%-116 - C1 -1OXV - ? -
45 PsiBlast_CBE 78.5336%-111 - C1 -1OXS - ? -
19 PsiBlast_PDB 78.1940%-106 - C1 -3RLF - MALK_ECOLI -
28 PsiBlast_CBE 78.0440%-110 - C1 -2AWO - MALK_ECOLI -
23 PsiBlast_CBE 77.8840%-105 - C1 -4KI0 - ? -
18 PsiBlast_PDB 77.8240%-105 - C1 -3PUX - MALK_ECOLI -
36 PsiBlast_CBE 77.7540%-102 - C1 -2R6G - MALK_ECOLI (first) -
31 PsiBlast_CBE 77.7140%-106 - C1 -2AWN - MALK_ECOLI -
55 PsiBlast_CBE 64.5035% -99 - C1 -4YMU 5.5 ?
56 PsiBlast_CBE 63.8535%-101 - C1 -4YMU 5.5 ?
54 PsiBlast_CBE 62.6235% -99 - C1 -4YMV 6.1 ?
68 PsiBlast_CBE 60.6736%-102 - C1 -3C4J 5.2 ?
49 PsiBlast_CBE 60.3938% -99 - C1 -1L2T 6.5 Y796_METJA
77 PsiBlast_CBE 60.3236% -99 - C1 -2OLK 5.2 ?
78 PsiBlast_CBE 60.2236% -99 - C1 -2OLK 5.8 ?
81 PsiBlast_CBE 59.6236%-104 - C1 -2OLJ 4.7 ?
66 PsiBlast_CBE 59.5136% -99 - C1 -3C41 5.9 ?
79 PsiBlast_CBE 59.4536% -98 - C1 -2OLK 5.3 ?
51 PsiBlast_CBE 58.9638%-102 - C1 -3TIF 3.1 Y796_METJA
70 PsiBlast_CBE 58.7636% -97 - C1 -2Q0H 5.6 ?
67 PsiBlast_CBE 58.6936%-100 - C1 -3C41 6.0 ?
50 PsiBlast_CBE 58.6738% -97 - C1 -1L2T 6.4 Y796_METJA
71 PsiBlast_CBE 58.5336% -98 - C1 -2Q0H 5.3 ?
76 PsiBlast_CBE 57.7136% -94 - C1 -2OLK 5.7 ?
52 PsiBlast_CBE 57.3038% -96 - C1 -3TIF 6.1 Y796_METJA
80 PsiBlast_CBE 56.6036% -97 - C1 -2OLJ 5.4 ?
69 PsiBlast_CBE 56.5936% -96 - C1 -3C4J 6.4 ?