@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0771: (2016-01-18 )
MTDMHDDIPAGSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAVYVDTPGLHKSGEKALNRYMNRTASAALKDVDVVIFVVDRTRWTEEDQMVLERVQYVSCPVLIAVNKTDRIEEKADLLPHLEWLTQQLPKAEVVPISAQHGTNLDVLEKLVAERLPESEHFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEFKQEGRILHIHALILVEREGQKKIIIGDKGERIKSIGQNARKDMEVLFDSKVMLNLWVKVKGGWSDDERALRSLGYGDL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]




GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]




GDP_C_3(2DYK)
?
[Raw transfer]




GDP_C_3(2DYK)
?
[Raw transfer]




GDP_D_4(2DYK)
?
[Raw transfer]




3 PsiBlast_PDB 93.3361%-118 - C2 -3IEU 8.1 ERA_ECOLI
22 PsiBlast_CBE 92.8361%-119 - C2 -1EGA - ERA_ECOLI -
21 PsiBlast_CBE 92.6861%-118 - C2 -3IEU 8.0 ERA_ECOLI
1 PsiBlast_PDB 91.8261%-119 - C2 -1EGA - ERA_ECOLI -
54 HHSearch 91.5959%-121 - C2 -1EGA - ERA_ECOLI -
7 PsiBlast_PDB 90.5942%-112 - C2 -3IEV 10.5 ERA_AQUAE
5 PsiBlast_PDB 89.9142%-112 - C2 -3R9W 10.5 ERA_AQUAE
6 PsiBlast_PDB 88.9842%-108 - C2 -3R9X 10.6 ERA_AQUAE
56 HHSearch 87.6942%-105 - C2 -3IEV 10.6 ERA_AQUAE
8 PsiBlast_PDB 84.5542%-111 - C2 -1WF3 10.6 ERA_THET8
55 HHSearch 84.2741%-102 - C2 -1WF3 10.5 ERA_THET8
44 Fugue 70.3257%-128 - C2 -1EGA - ERA_ECOLI -
20 PsiBlast_PDB 60.7027%-110 - C2 -3PQC - ENGB_THEMA -
50 Fugue 58.7023%-106 - C2 -1PUI - ENGB_ECOLI -
9 PsiBlast_PDB 58.3034%-129 - C2 -4DCS - DER_BACSU -
2 PsiBlast_PDB 58.2461% 116 - C- -1X1L - ERA_THET8 -
4 PsiBlast_PDB 58.1461% 119 - C- -1X18 - ERA_THET8 -
10 PsiBlast_PDB 57.6834%-138 - C2 -4DCU - DER_BACSU -
12 PsiBlast_PDB 57.5334% -96 - C2 -4KYU 5.9 DER_BACSU
11 PsiBlast_PDB 57.2934%-138 - C2 -4DCV - DER_BACSU -
14 PsiBlast_PDB 56.7533% -89 - C2 -2DYK 7.6 ?
24 PsiBlast_CBE 56.3933% -93 - C2 -2DYK 7.5 ?
23 PsiBlast_CBE 56.0834%-112 - C2 -4KYU 7.2 DER_BACSU
68 HHSearch 54.7132% -91 * C2 *2DYK 7.7 ?