@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0849: (2016-01-22 )
MPDTLRHARVIILGSGPAGYSAAVYAARANLKPLLITGMQAGGQLTTTTEVDNWPGDPHGLTGPALMQRMQEHAERFETEIVFDHIHAVDLAGKPFTLRGDNGTYTCDALIVATGASARYLGLPSEQAFMGKGVSACATCDGFFYRNREVAVIGGGNTAVEEALYLANIASRVTLVHRRETFRAEKILQDKLQARVAEGKIVLKLNAEVDEVLGDTMGVTGVRLKTRDGGSEEIAVDGMFVAIGHTPNTSLFEGQLALKDGYLVVNGGREGNATATNVPGVFAAGDVADHVYRQAITSAGAGCMAALDVERYLDSL

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]




FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]




FAD_C_3(1CL0)
TRXB_ECOLI
[Raw transfer]




FDA_A_2(4JNQ)
?
[Raw transfer]




FAD_B_8(4CCR)
?
[Raw transfer]




FAD_C_10(4CCR)
?
[Raw transfer]




FAD_A_3(3D8X)
TRXB1_YEAST
[Raw transfer]




FAD_A_6(4CCQ)
?
[Raw transfer]




FAD_A_6(4CCR)
?
[Raw transfer]




FAD_A_8(4CBQ)
?
[Raw transfer]




FAD_A_5(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_C_10(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_E_5(1VDC)
TRXB1_ARATH
[Raw transfer]




FAD_B_10(4CCQ)
?
[Raw transfer]




FAD_B_5(3D8X)
TRXB1_YEAST
[Raw transfer]




FAD_D_13(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_B_5(4UP3)
?
[Raw transfer]




FAD_A_5(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_B_4(2Q7V)
?
[Raw transfer]




FAD_A_3(2Q7V)
?
[Raw transfer]




FAD_E_5(1VDC)
TRXB1_ARATH
[Raw transfer]




FAD_B_7(4A5L)
?
[Raw transfer]




FAD_B_6(2WHD)
?
[Raw transfer]




FAD_A_5(4A65)
?
[Raw transfer]




FAD_B_7(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_A_3(4UP3)
?
[Raw transfer]




FAD_B_15(4CBQ)
?
[Raw transfer]




FAD_D_12(4CCR)
?
[Raw transfer]




FAD_A_3(2Q7V)
?
[Raw transfer]




FAD_A_3(2WHD)
?
[Raw transfer]




FAD_A_5(2A87)
TRXB_MYCTU
[Raw transfer]




FAD_A_5(4A5L)
?
[Raw transfer]




FAD_A_5(2A87)
TRXB_MYCTU
[Raw transfer]




CIT_B_9(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_B_10(4A65)
?
[Raw transfer]




FAD_B_7(2A87)
TRXB_MYCTU
[Raw transfer]




CIT_C_12(3ITJ)
TRXB1_YEAST
[Raw transfer]




ACY_B_8(3F8D)
?
[Raw transfer]




ACY_B_9(3F8P)
?
[Raw transfer]




1 PsiBlast_PDB 97.5870%-120 - C1 -1CL0 13.4 TRXB_ECOLI
68 HHSearch 93.1571%-116 - C1 -1TRB 13.2 TRXB_ECOLI
3 PsiBlast_PDB 92.7870%-117 - C1 -1TRB 13.2 TRXB_ECOLI
22 PsiBlast_CBE 89.7770%-112 - C1 -1F6M - TRXB_ECOLI -
2 PsiBlast_PDB 88.8070%-112 - C1 -1F6M - TRXB_ECOLI -
23 PsiBlast_CBE 88.7570%-110 - C1 -1F6M - TRXB_ECOLI -
21 PsiBlast_CBE 88.2370%-110 - C1 -1F6M - TRXB_ECOLI -
4 PsiBlast_PDB 86.7857%-119 - C1 -4JNQ 13.4 ?
26 PsiBlast_CBE 79.2447%-117 - C1 -3ITJ 10.9 TRXB1_YEAST
7 PsiBlast_PDB 77.6247%-119 - C1 -3D8X 12.6 TRXB1_YEAST
28 PsiBlast_CBE 76.1347%-118 - C1 -3D8X 12.5 TRXB1_YEAST
67 HHSearch 76.1149%-114 - C1 -2A87 10.1 TRXB_MYCTU
61 HHSearch 76.0849%-111 - C1 -3ITJ 10.5 TRXB1_YEAST
32 PsiBlast_CBE 75.9141%-119 - C1 -4CCR 11.4 ?
27 PsiBlast_CBE 75.8447%-117 - C1 -3ITJ 11.3 TRXB1_YEAST
6 PsiBlast_PDB 75.5247%-112 - C1 -3ITJ 10.7 TRXB1_YEAST
13 PsiBlast_PDB 75.3141%-119 - C1 -4CCR 11.9 ?
8 PsiBlast_PDB 74.8744%-119 - C1 -2Q7V 12.4 ?
34 PsiBlast_CBE 74.8341%-118 - C1 -4CBQ 11.4 ?
14 PsiBlast_PDB 74.6845%-115 - C1 -1VDC 11.7 TRXB1_ARATH
38 PsiBlast_CBE 73.8041%-117 - C1 -4UP3 11.2 ?
35 PsiBlast_CBE 73.6541%-117 - C1 -4A65 12.0 ?
25 PsiBlast_CBE 73.3547%-119 - C1 -3ITJ 10.2 TRXB1_YEAST
29 PsiBlast_CBE 73.3444%-118 - C1 -2Q7V 12.3 ?
11 PsiBlast_PDB 73.0541%-116 - C1 -4CBQ 11.7 ?
5 PsiBlast_PDB 73.0249%-112 - C1 -2A87 10.1 TRXB_MYCTU
31 PsiBlast_CBE 73.0141%-119 - C1 -4CCR 11.7 ?
36 PsiBlast_CBE 72.6741%-119 - C1 -4A5L 12.5 ?
66 HHSearch 72.1548%-110 - C1 -1VDC 11.5 TRXB1_ARATH
33 PsiBlast_CBE 72.1141%-116 - C1 -4CCQ 11.9 ?
9 PsiBlast_PDB 71.9841%-116 - C1 -4A5L 11.8 ?
37 PsiBlast_CBE 71.8045%-114 - C1 -2WHD 12.2 ?
16 PsiBlast_PDB 71.3841%-117 - C1 -4UP3 10.7 ?
24 PsiBlast_CBE 71.0949%-111 - C1 -2A87 11.2 TRXB_MYCTU
10 PsiBlast_PDB 70.8841%-117 - C1 -4A65 11.7 ?
65 HHSearch 70.6146%-112 - C1 -2Q7V 12.4 ?
12 PsiBlast_PDB 70.4541%-115 - C1 -4CCQ 10.9 ?
15 PsiBlast_PDB 70.1445%-112 - C1 -2WHD 12.9 ?
53 PsiBlast_CBE 59.0135%-102 - C1 -3F8D 3.9 ?
30 PsiBlast_CBE 58.4541%-113 - C1 -4CCR 10.8 ?
49 PsiBlast_CBE 57.7635%-100 - C1 -3F8P 3.7 ?