@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0860: (2016-01-22 )
MSERGDRLSWAEIRRLALRHKKALLFANLVAVLATLCTVPIPLLLPLLVDEVLLGKGDGALRFMDRLLPADWQVAFGYIGLMLAATLLLRGAALVFNVLQAKLFARLSKDIVYRIRLRLIERLRHIALGEYETLGGGSISAHLVTDLDTLDKFVGETLSRFLVALLTLLGTAAILVWMHWQLALLILLFNPLVIWSTVQLGKRVKHLKKLENDSTARFTQALTETLEAIQEVRAGNRQGYFLGRLGHRAQEVRDYAVASQWKSDAAGRASGLLFQFGIDVFRAAAMLTVLLSDLSIGQMLAVFSYLWFMIGPVEQLLGLQYAYYAAGGALQRINELLARADEPRYPPLRDPFAGRTTVGIEVRGLDFAYGEDKVLEQLDLNIGAGEKVALVGASGGGKSTLVQLLLGLYSAQRGSIRYGGVPLEEIGLDCVREHVAVVLQHPALFNDSVRANLTMGRERSDQACWRALEIAQLADGVRRLPQGLDTVVGRSGVRLSGGQRQRLAIARMILAEPKVVILDEATSALDAATEYALHQALGDFLEGRTTLIVAHRLSAVKQADRVLVFDGGHIAEDGDHQQLIAEGGLYARLYGHLQQM

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




11 PsiBlast_PDB 88.4129%-113 - C2 -3B60 - MSBA_SALTY -
106 Fugue 85.9727%-124 - C2 -4F4C - PGP1_CAEEL -
103 Fugue 84.4227%-113 - C2 -3B60 - MSBA_SALTY -
114 HHSearch 83.5428%-121 - C2 -3ZDQ - ABCBA_HUMAN -
113 HHSearch 82.4927%-109 - C2 -3B60 - MSBA_SALTY -
32 PsiBlast_CBE 82.2331%-121 - C2 -4M1M - MDR1A_MOUSE -
29 PsiBlast_CBE 82.0431%-120 - C2 -4M2S - MDR1A_MOUSE -
27 PsiBlast_CBE 81.5731%-118 - C2 -4M2T - MDR1A_MOUSE -
28 PsiBlast_CBE 81.4131%-120 - C2 -4M2T - MDR1A_MOUSE -
3 PsiBlast_PDB 81.3328%-120 - C2 -4Q4A - Y288_THEMA -
12 PsiBlast_PDB 81.2231%-129 - C2 -4F4C - PGP1_CAEEL -
30 PsiBlast_CBE 80.7931%-120 - C2 -4M2S - MDR1A_MOUSE -
2 PsiBlast_PDB 80.7428%-120 - C2 -3QF4 - Y288_THEMA -
31 PsiBlast_CBE 80.6631%-117 - C2 -4M1M - MDR1A_MOUSE -
19 PsiBlast_PDB 80.5431%-123 - C2 -4Q9I - MDR1A_MOUSE -
18 PsiBlast_PDB 80.4731%-122 - C2 -4Q9H - MDR1A_MOUSE -
4 PsiBlast_PDB 80.2028%-115 - C2 -4Q4H - Y288_THEMA -
7 PsiBlast_PDB 80.0129%-106 - C2 -2ONJ - Y1866_STAAM -
6 PsiBlast_PDB 79.8529%-108 - C2 -2HYD - Y1866_STAAM -
20 PsiBlast_PDB 79.5731%-122 - C2 -4Q9J - MDR1A_MOUSE -
45 PsiBlast_CBE 56.9440%-118 - C2 -3NHB 6.6
47 PsiBlast_CBE 56.3940%-118 - C2 -3NH9 6.1
46 PsiBlast_CBE 55.1740%-115 - C2 -3NHA 6.5
74 PsiBlast_CBE 52.8138%-108 - C2 -3VX4 6.4 ?
75 PsiBlast_CBE 51.4538%-107 - C2 -3VX4 6.9 ?
122 HHSearch 51.3535%-100 - C2 -2IXE 7.4 TAP1_RAT
119 HHSearch 51.1236%-101 - C2 -3VX4 6.9 ?
121 HHSearch 49.4439%-104 - C2 -1MV5 6.2 LMRA_LACLA