@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0895: (2016-01-24 )
MSAPHAQVERADFDRYMVPNYAPAAFIPVRGEGSRVWDQSGRELIDFAGGIAVTSLGHAHPALVKALTEQAQRIWHVSNVFTNEPALRLARKLVDATFAERVFLANSGAEANEAAFKLARRYANDVYGPQKYEIIAASNSFHGRTLFTVNVGGQPKYSDGFGPKFEGITHVPYNDLEALKAAISDKTCAVVLEPIQGEGGVLPAQQAYLEGARKLCDEHNALLVFDEVQSGMGRVGELFAYMHYGVVPDILSSAKSLGGGFPIGAMLTTGEIAKHLSVGTHGTTYGGNPLASAVAEAALDVINTPEVLDGVKAKHERFKSRLQKIGQEYGIFDEIRGMGLLIGAALTDEWKGKARDVLNAAEKEAVMVLQASPDVVRFAPSLVIDDAEIDEGLERFERAVAKLVRG

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]



P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]



P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]



PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]



PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]



PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]



PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]



PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]



PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]



POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]



PLP_A_3(2ORD)
ARGD_THEMA
[Raw transfer]



PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]



PLP_A_3(2EO5)
?
[Raw transfer]



PLP_A_3(2EO5)
?
[Raw transfer]



PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]



PLP_B_6(2BYJ)
OAT_HUMAN
[Raw transfer]



PLP_A_3(2EH6)
ARGD_AQUAE
[Raw transfer]



PLP_A_4(4PPM)
?
[Raw transfer]



PLP_B_6(4PPM)
?
[Raw transfer]



PLP_A_5(2BYJ)
OAT_HUMAN
[Raw transfer]



PLP_B_4(2EH6)
ARGD_AQUAE
[Raw transfer]



PLP_C_7(2BYJ)
OAT_HUMAN
[Raw transfer]



EDO_A_6(4JEW)
ARGD_SALTY
[Raw transfer]



EDO_A_7(4JEZ)
ARGD_SALTY
[Raw transfer]



EDO_A_5(4JF1)
ARGD_SALTY
[Raw transfer]



EDO_B_12(4JF1)
ARGD_SALTY
[Raw transfer]



EDO_A_4(4JEX)
ARGD_SALTY
[Raw transfer]



EDO_A_5(2PB2)
ARGD_SALTY
[Raw transfer]
6 PsiBlast_PDB 96.3565% -95 - C1 -4JEY - ARGD_SALTY -
3 PsiBlast_PDB 93.8065% -96 - C1 -4JEW - ARGD_SALTY -
36 PsiBlast_CBE 93.7960% -93 - C1 -4ADB - ASTC_ECOLI -
33 PsiBlast_CBE 93.7460% -94 - C1 -4ADC - ASTC_ECOLI -
5 PsiBlast_PDB 93.4565% -96 - C1 -4JF1 3.0 ARGD_SALTY
12 PsiBlast_PDB 93.3060% -93 - C1 -4ADE - ASTC_ECOLI -
1 PsiBlast_PDB 93.1565% -95 - C1 -2PB0 - ARGD_SALTY -
35 PsiBlast_CBE 93.1360% -91 - C1 -4ADB - ASTC_ECOLI -
7 PsiBlast_PDB 93.1365% -95 - C1 -4JEZ 3.0 ARGD_SALTY
31 PsiBlast_CBE 92.9160% -92 - C1 -4ADC - ASTC_ECOLI -
10 PsiBlast_PDB 92.9060% -93 - C1 -4ADC - ASTC_ECOLI -
32 PsiBlast_CBE 92.7960% -93 - C1 -4ADC - ASTC_ECOLI -
30 PsiBlast_CBE 92.6960% -93 - C1 -4ADD - ASTC_ECOLI -
28 PsiBlast_CBE 92.3160% -90 - C1 -4ADD - ASTC_ECOLI -
34 PsiBlast_CBE 92.2560% -93 - C1 -4ADB - ASTC_ECOLI -
11 PsiBlast_PDB 92.1860% -90 - C1 -4ADD - ASTC_ECOLI -
2 PsiBlast_PDB 91.7065% -94 - C1 -2PB2 - ARGD_SALTY -
29 PsiBlast_CBE 91.4360% -91 - C1 -4ADD - ASTC_ECOLI -
4 PsiBlast_PDB 91.3465% -92 - C1 -4JEV - ARGD_SALTY -
9 PsiBlast_PDB 91.0960% -90 - C1 -4ADB - ASTC_ECOLI -
24 PsiBlast_CBE 90.6665% -92 - C1 -4JF1 4.1 ARGD_SALTY
8 PsiBlast_PDB 90.6465% -96 - C1 -4JEX 3.0 ARGD_SALTY
27 PsiBlast_CBE 90.2465% -93 - C1 -4JEX 5.4 ARGD_SALTY
23 PsiBlast_CBE 90.0665% -92 - C1 -4JEW 5.4 ARGD_SALTY
25 PsiBlast_CBE 89.4965% -92 - C1 -4JEY 4.2 ARGD_SALTY
26 PsiBlast_CBE 89.1465% -93 - C1 -4JEZ 2.9 ARGD_SALTY
21 PsiBlast_CBE 88.5665% -93 - C1 -2PB2 3.0 ARGD_SALTY
109 HHSearch 73.9443% -88 - C1 -2ORD 4.6 ARGD_THEMA
62 PsiBlast_CBE 70.4234% -87 - C1 -2OAT 7.0 OAT_HUMAN
47 PsiBlast_CBE 70.0334% -85 - C1 -2BYJ 2.9 OAT_HUMAN
45 PsiBlast_CBE 68.5634% -85 - C1 -2BYJ 3.1 OAT_HUMAN
102 HHSearch 68.5433% -83 - C1 -2OAT 7.0 OAT_HUMAN
40 PsiBlast_CBE 68.5043% -90 - C1 -1VEF 2.7 ARGD_THET8
124 Fugue 68.2232% -87 - C1 -2OAT 7.0 OAT_HUMAN
46 PsiBlast_CBE 68.1034% -85 - C1 -2BYJ 3.1 OAT_HUMAN
104 HHSearch 67.1941% -85 - C1 -1VEF 2.6 ARGD_THET8
122 HHSearch 66.5938% -85 - C1 -2EH6 2.9 ARGD_AQUAE
38 PsiBlast_CBE 66.5643% -86 - C1 -1WKH 6.6 ARGD_THET8
39 PsiBlast_CBE 66.1743% -87 - C1 -1WKG 5.7 ARGD_THET8
37 PsiBlast_CBE 65.0640% -86 - C1 -2EH6 3.4 ARGD_AQUAE
97 PsiBlast_CBE 61.1433% -88 - C1 -2EO5 2.7 ?
120 HHSearch 60.0334% -85 - C1 -2EO5 2.7 ?
99 PsiBlast_CBE 46.6633% -82 - C1 -4PPM 2.5 ?
98 PsiBlast_CBE 46.1333% -84 - C1 -4PPM 4.2 ?