@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0903: (2016-01-24 )
MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCANDDAPSLKVVADHIRSCSFLIADGVLPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTEEEQFAKTLEQGLKILEQDLAELQGSVIPGNVVFKLYDTYGFPVDLTNDIARERELTIDEDGFEREMEAQRERARASSAFGMDYNSLVKVDGETRFLGYQGVSGAGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGYLEAAGVRFDVRDTTKAGGAHLHHGVVARGNLSVGGAVKAEVDASVRQATALNHSATHLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEETDIDTAKAKGAMALFGEKYGDQVRVLSMGGDFSVELCGGTHVSRTGDIGLFKITSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLGGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGGGRPDMAQGGGTDAAKLDEALALAQRFVEQGL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



A5A_A_2(2ZTG)
SYA_ARCFU
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]



ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]



ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]
22 PsiBlast_CBE 88.7073% -85 - C1 -3HY0 5.8 SYA_ECOLI
2 PsiBlast_PDB 88.6973% -86 - C1 -3HXV 5.8 SYA_ECOLI
1 PsiBlast_PDB 88.6473% -86 - C1 -3HXU 8.9 SYA_ECOLI
25 PsiBlast_CBE 88.5473% -84 - C1 -3HXZ - SYA_ECOLI -
5 PsiBlast_PDB 88.5173% -87 - C1 -3HXY 8.9 SYA_ECOLI
31 HHSearch 88.4773% -85 - C1 -3HY0 5.7 SYA_ECOLI
6 PsiBlast_PDB 88.4773% -85 - C1 -3HXZ - SYA_ECOLI -
7 PsiBlast_PDB 88.4173% -86 - C1 -3HY0 5.7 SYA_ECOLI
3 PsiBlast_PDB 88.2673% -85 - C1 -3HXW 8.7 SYA_ECOLI
24 PsiBlast_CBE 88.2373% -85 - C1 -3HXZ - SYA_ECOLI -
23 PsiBlast_CBE 88.1373% -85 - C1 -3HXZ - SYA_ECOLI -
4 PsiBlast_PDB 88.0373% -86 - C1 -3HXX 10.1 SYA_ECOLI
28 HHSearch 87.8930% -77 - C1 -3WQY - SYA_ARCFU -
8 PsiBlast_PDB 87.6073% -82 - C1 -3HY1 7.6 SYA_ECOLI
21 PsiBlast_CBE 85.6673% -89 - C1 -3HY1 - SYA_ECOLI -
15 PsiBlast_PDB 83.9228% -68 - C1 -3WQY - SYA_ARCFU -
16 PsiBlast_PDB 82.9628% -71 - C1 -3WQZ - SYA_ARCFU -
32 HHSearch 80.1654% -84 - C1 -1YFS 2.6 SYA_AQUAE
9 PsiBlast_PDB 77.7954% -88 - C1 -3HTZ - SYA_AQUAE -
12 PsiBlast_PDB 77.6854% -86 - C1 -1YFT - SYA_AQUAE -
10 PsiBlast_PDB 77.6754% -85 - C1 -1YFR 2.9 SYA_AQUAE
30 HHSearch 76.8831% -68 * C1 *2ZTG 8.0 SYA_ARCFU
27 PsiBlast_CBE 76.5454% -83 - C1 -1YFR 5.3 SYA_AQUAE