@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0963: (2016-01-25 )
MMRSHYCGQLNESLDGQEVTLCGWVHRRRDHGGVIFLDVRDREGLAQVVFDPDRAETFAKADRVRSEFVVKITGKVRLRPEGARNPNMASGSIEVLGYELEVLNQAETPPFPLDEYSDVGEETRLRYRFIDLRRPEMAAKLKLRARITSSIRRYLDDNGFLDVETPILGRPTPEGARDYLVPSRTYPGHFFALPQSPQLFKQLLMVAGFDRYYQIAKCFRDEDLRADRQPEFTQIDIETSFLDESDIIGITEKMVRQLFKEVLDVEFDEFPHMPFEEAMRRYGSDKPDLRIPLELVDVADQLKEVEFKVFSGPANDPKGRVAALRVPGAASMPRSQIDDYTKFVGIYGAKGLAYIKVNERAKGVEGLQSPIVKFIPEANLNVILDRVGAVDGDIVFFGADKAKIVCDALGALRIKVGHDLKLLTREWAPMWVVDFPMFEENDDGSLSALHHPFTSPKCTPAELEANPGAALSRAYDMVLNGTELGGGSIRIHDKSMQQAVFRVLGIDEAEQEEKFGFLLDALKYGAPPHGGLAFGLDRLVMLMTGASSIREVIAFPKTQSAGDVMTQAPGSVDGKALRELHIRLREQPKAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMO_E_5(1G51)
SYD_THETH
[Raw transfer]



AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_F_6(1G51)
SYD_THETH
[Raw transfer]



ASP_B_6(4O2D)
SYDND_MYCS2
[Raw transfer]



ASP_A_3(4O2D)
SYDND_MYCS2
[Raw transfer]



ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]



GOL_B_15(1E1O)
SYK2_ECOLI
[Raw transfer]



3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]
1 PsiBlast_PDB 95.70100%-108 - C7 -4WJ3 - SYDND_PSEAE -
2 PsiBlast_PDB 94.42100%-106 - C7 -4WJ4 2.8 SYDND_PSEAE
5 PsiBlast_PDB 86.7464% -96 - C7 -1C0A 8.6 SYD_ECOLI
3 PsiBlast_PDB 86.2364% -98 - C7 -1EQR - SYD_ECOLI -
62 Fugue 86.1763% -96 - C7 -1C0A 8.6 SYD_ECOLI
4 PsiBlast_PDB 86.1264%-100 - C7 -1IL2 - SYD_ECOLI -
23 PsiBlast_CBE 85.7464%-100 - C7 -1EQR - SYD_ECOLI -
21 PsiBlast_CBE 85.6264% -96 - C7 -1IL2 - SYD_ECOLI -
22 PsiBlast_CBE 84.7164% -98 - C7 -1EQR - SYD_ECOLI -
42 HHSearch 80.6452% -97 - C7 -1L0W - SYD_THETH -
10 PsiBlast_PDB 80.1250% -98 - C7 -1L0W - SYD_THETH -
9 PsiBlast_PDB 79.8850% -98 - C7 -1G51 7.5 SYD_THETH
25 PsiBlast_CBE 79.5050% -97 - C7 -1G51 7.8 SYD_THETH
8 PsiBlast_PDB 79.1550% -99 - C7 -1EFW - SYD_THETH -
7 PsiBlast_PDB 78.5148% -92 - C7 -4O2D 3.6 SYDND_MYCS2
6 PsiBlast_PDB 77.1448% -91 - C7 -4RMF 3.3 SYDND_MYCS2
24 PsiBlast_CBE 74.2448% -84 - C7 -4O2D 3.8 SYDND_MYCS2
11 PsiBlast_PDB 69.9839% -79 - C7 -4AH6 - SYDM_HUMAN -
46 HHSearch 59.4632% -79 * C7 *3NEM - SYD_THEKO -
43 HHSearch 59.0830% -78 - C7 -1WYD - SYDND_SULTO -