@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1010: (2016-01-25 )
MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHKALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVLA

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




GOL_B_12(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_14(3I7R)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




GOL_A_3(3TAK)
?
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




GOL_B_10(3PUL)
?
[Raw transfer]




GOL_A_4(4ICN)
?
[Raw transfer]




LYS_B_6(3PUO)
DAPA_PSEAE
[Raw transfer]




GOL_B_8(4ICN)
?
[Raw transfer]




GOL_A_9(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_A_6(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




GOL_C_14(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_4(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_D_17(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_12(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_D_11(4I7U)
DAPA_AGRFC
[Raw transfer]




GOL_B_8(3PUD)
?
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




GOL_A_3(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_7(3PUE)
?
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_7(3PUL)
?
[Raw transfer]




GOL_B_6(4I7U)
DAPA_AGRFC
[Raw transfer]




LYS_B_6(3PUO)
DAPA_PSEAE
[Raw transfer]




GOL_B_19(3I7S)
DAPA_ECOLI
[Raw transfer]




LYS_A_4(4PFM)
?
[Raw transfer]




LYZ_B_4(3TCE)
?
[Raw transfer]




LYZ_B_4(3TCE)
?
[Raw transfer]




LYZ_A_3(3TCE)
?
[Raw transfer]




LYS_B_7(4PFM)
?
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




LYS_B_6(3PUL)
?
[Raw transfer]




LYS_B_5(3PUE)
?
[Raw transfer]




EDO_B_8(3SI9)
DAPA_BARHE
[Raw transfer]




PYR_B_4(3DI1)
DAPA_STAAC
[Raw transfer]




PYR_A_3(3DI1)
DAPA_STAAC
[Raw transfer]




21 PsiBlast_CBE 98.51100%-117 - C7 -3QZE - DAPA_PSEAE -
23 PsiBlast_CBE 98.44100%-115 - C7 -3QZE - DAPA_PSEAE -
22 PsiBlast_CBE 98.34100%-116 - C7 -3QZE - DAPA_PSEAE -
1 PsiBlast_PDB 98.22100%-117 - C7 -3QZE - DAPA_PSEAE -
103 HHSearch 97.7399%-118 - C7 -3QZE - DAPA_PSEAE -
4 PsiBlast_PDB 97.7298%-121 - C7 -3PUO 2.8 DAPA_PSEAE
3 PsiBlast_PDB 97.6498%-116 - C7 -3PS7 - DAPA_PSEAE -
26 PsiBlast_CBE 97.5498%-118 - C7 -3PS7 - DAPA_PSEAE -
5 PsiBlast_PDB 97.4398%-119 - C7 -3S8H - DAPA_PSEAE -
2 PsiBlast_PDB 97.3498%-116 - C7 -3NOE - DAPA_PSEAE -
24 PsiBlast_CBE 97.3098%-115 - C7 -3S8H - DAPA_PSEAE -
25 PsiBlast_CBE 97.2698%-116 - C7 -3PUO 2.5 DAPA_PSEAE
27 PsiBlast_CBE 96.9498%-118 - C7 -3NOE - DAPA_PSEAE -
13 PsiBlast_PDB 85.4861%-110 - C7 -3U8G - ? -
31 PsiBlast_CBE 85.4161%-112 - C7 -3TDF - ? -
30 PsiBlast_CBE 85.2261%-110 - C7 -3U8G - ? -
33 PsiBlast_CBE 84.8461%-110 - C7 -3TAK - ? -
34 PsiBlast_CBE 84.6661%-111 - C7 -3RK8 - ? -
15 PsiBlast_PDB 84.6261%-109 - C7 -4DXV - ? -
9 PsiBlast_PDB 84.6261%-112 - C7 -3RK8 - ? -
11 PsiBlast_PDB 84.3661%-108 - C7 -3TCE 2.4 ?
35 PsiBlast_CBE 84.2361%-111 - C7 -3PUL 2.7 ?
106 HHSearch 84.2161%-110 - C7 -3TAK 2.0 ?
37 PsiBlast_CBE 83.6861%-109 - C7 -3PUD 2.1 ?
8 PsiBlast_PDB 83.5861%-110 - C7 -3PUL 2.8 ?
36 PsiBlast_CBE 83.3561%-107 - C7 -3PUE 2.1 ?
32 PsiBlast_CBE 83.2561%-107 - C7 -3TCE 2.7 ?
7 PsiBlast_PDB 83.1961%-110 - C7 -3PUE 2.7 ?
108 HHSearch 82.1852%-106 - C7 -3FLU 2.1 DAPA_NEIMB
59 PsiBlast_CBE 81.8151%-105 - C7 -3FLU 2.2 DAPA_NEIMB
60 PsiBlast_CBE 81.7151%-105 - C7 -3FLU 2.1 DAPA_NEIMB
18 PsiBlast_PDB 81.5757%-108 - C7 -1YXD 3.5 DAPA_ECOLI
46 PsiBlast_CBE 81.1556%-111 - C7 -3I7Q 3.3 DAPA_ECOLI
39 PsiBlast_CBE 81.1257%-107 - C7 -1YXD 3.3 DAPA_ECOLI
44 PsiBlast_CBE 80.7856%-109 - C7 -3I7R 3.2 DAPA_ECOLI
19 PsiBlast_PDB 80.6957%-107 - C7 -2ATS 3.3 DAPA_ECOLI
38 PsiBlast_CBE 80.6857%-108 - C7 -2ATS 3.9 DAPA_ECOLI
45 PsiBlast_CBE 80.6656%-108 - C7 -3I7R Error DAPA_ECOLI
42 PsiBlast_CBE 80.5656%-108 - C7 -3I7S 2.3 DAPA_ECOLI
54 PsiBlast_CBE 80.5456%-110 - C7 -4ICN 2.9 ?
53 PsiBlast_CBE 80.4756%-110 - C7 -4ICN 3.4 ?
56 PsiBlast_CBE 80.3356%-110 - C7 -4PFM 3.1 ?
55 PsiBlast_CBE 80.2856%-110 - C7 -4PFM 2.5 ?
20 PsiBlast_PDB 79.9956%-108 - C7 -3I7Q 2.1 DAPA_ECOLI
43 PsiBlast_CBE 79.8556%-106 - C7 -3I7S 2.7 DAPA_ECOLI
52 PsiBlast_CBE 79.6355%-110 - C7 -3G0S 2.3 DAPA_SALTY
51 PsiBlast_CBE 79.4255%-111 - C7 -3G0S 2.4 DAPA_SALTY
113 HHSearch 78.9546%-105 - C7 -3SI9 2.2 DAPA_BARHE
84 PsiBlast_CBE 78.5545%-107 - C7 -3SI9 2.9 DAPA_BARHE
85 PsiBlast_CBE 78.5145%-105 - C7 -3SI9 2.2 DAPA_BARHE
83 PsiBlast_CBE 78.2445%-104 - C7 -3SI9 Error DAPA_BARHE
73 PsiBlast_CBE 78.0645%-106 - C7 -4I7U 2.2 DAPA_AGRFC
75 PsiBlast_CBE 77.7645%-105 - C7 -4I7U 3.0 DAPA_AGRFC
90 PsiBlast_CBE 75.0141%-105 - C7 -3DAQ 2.3 DAPA_STAAR
124 HHSearch 74.9441%-104 - C7 -3DAQ Error DAPA_STAAR
87 PsiBlast_CBE 74.6441%-105 - C7 -3DAQ 2.4 DAPA_STAAR
88 PsiBlast_CBE 74.1541%-105 - C7 -3DAQ 3.0 DAPA_STAAR
89 PsiBlast_CBE 73.9941%-104 - C7 -3DAQ 2.3 DAPA_STAAR
92 PsiBlast_CBE 73.5940%-106 - C7 -3DI1 3.3 DAPA_STAAC
93 PsiBlast_CBE 72.2840%-105 - C7 -3DI0 3.0 DAPA_STAAC
94 PsiBlast_CBE 72.0140%-107 - C7 -3DI0 3.5 DAPA_STAAC
91 PsiBlast_CBE 71.6740%-103 - C7 -3DI1 3.1 DAPA_STAAC