@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1113: (2016-01-26 )
MPAILSSRQRIALRLAWRFMAPYRWRMLGALVALLFTAAITLSLGQGIRLLVDQGFLTASPELLNRYILLFFVLVLGLAVGTFVRFYLVSWIGERFVADIRKRVFDHLIELHPGFYETNRSSEIQSRLTADTTLLQTVIGSSLSMALRNALMLVGGVLLMFVTNAKLTSIVVLALPLVIAPILLFGRRVRSLSRESQDRVADVGSYVGETLGQIKTVQAYNHQAQDRQRFAGTVERAFDTARKRIAQRAWLITVVIVLVLGAVGIMLWVGGRDVIAGSISAGELAAFVFYSLIVGMAFGTLSEVIGELQRAAGAAERIAELLRARSEIRPPAQPRKLAARVSGRIELQAVRFAYPTRPEHWAIDDISLAVEPGETLALVGPSGAGKSTLFDLLLRFFDPQQGRLLLDGQPIVELDPADLRRSFALVSQNPALFFGSVEENIRYGRPHASAAEVEAAARAAHAHEFILGLPQGYATHLGEGGIGLSGGQRQRLAIARALLVDAPVLLLDEATSALDAESEHLIQQALPGLMSGRTTLVIAHRLATVQSADRIAVIDQGRLVAIGSHARLIAENPLYARLAELQFAAGGR

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




105 HHSearch 88.4036%-115 - C2 -3ZDQ - ABCBA_HUMAN -
2 PsiBlast_PDB 87.7636%-116 - C2 -4AYX 5.9 ABCBA_HUMAN
3 PsiBlast_PDB 87.4436%-114 - C2 -3ZDQ - ABCBA_HUMAN -
21 PsiBlast_CBE 87.3134%-113 - C2 -2ONJ 6.0 Y1866_STAAM
17 PsiBlast_PDB 87.0529%-126 - C2 -3QF4 - Y288_THEMA -
1 PsiBlast_PDB 86.9236%-111 - C2 -4AYT 6.1 ABCBA_HUMAN
18 PsiBlast_PDB 86.8729%-127 - C2 -4Q4A - Y288_THEMA -
22 PsiBlast_CBE 86.8534%-113 - C2 -2HYD 4.3 Y1866_STAAM
6 PsiBlast_PDB 86.7134%-112 - C2 -2ONJ 5.9 Y1866_STAAM
5 PsiBlast_PDB 86.1734%-112 - C2 -2HYD 4.5 Y1866_STAAM
19 PsiBlast_PDB 86.0029%-126 - C2 -4Q4H - Y288_THEMA -
4 PsiBlast_PDB 85.7736%-116 - C2 -4AYW 5.7 ABCBA_HUMAN
106 HHSearch 84.9632%-118 - C2 -3WMG - ? -
13 PsiBlast_PDB 83.1535%-116 - C2 -4F4C - PGP1_CAEEL -
24 PsiBlast_CBE 82.9033%-109 - C2 -3B60 - MSBA_SALTY -
25 PsiBlast_CBE 82.8733%-109 - C2 -3B60 - MSBA_SALTY -
11 PsiBlast_PDB 82.8733%-110 - C2 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 82.4733%-109 - C2 -3B60 - MSBA_SALTY -
125 Fugue 81.8832%-110 - C2 -3B60 - MSBA_SALTY -
103 HHSearch 81.8332%-110 - C2 -3B60 - MSBA_SALTY -
40 PsiBlast_CBE 59.8746%-117 - C2 -2PMK 6.7
52 PsiBlast_CBE 58.7745%-109 - C2 -1XEF 7.3
34 PsiBlast_CBE 58.7546%-103 - C2 -3NH9 6.1
54 PsiBlast_CBE 58.5745%-112 - C2 -1XEF 7.6 HLYBP_ECOLX
43 PsiBlast_CBE 58.4045%-114 - C2 -2FGK 7.5 HLYBP_ECOLX
41 PsiBlast_CBE 58.3145%-113 - C2 -2FGK 7.5
53 PsiBlast_CBE 58.1845%-113 - C2 -1XEF 7.4 HLYBP_ECOLX
32 PsiBlast_CBE 57.7246%-104 - C2 -3NHB 6.5
48 PsiBlast_CBE 57.5645%-108 - C2 -2FGJ 7.3 HLYBP_ECOLX
47 PsiBlast_CBE 57.4845%-112 - C2 -2FGJ 7.1
44 PsiBlast_CBE 57.4545%-111 - C2 -2FGK 7.7 HLYBP_ECOLX
50 PsiBlast_CBE 57.3945%-108 - C2 -2FGJ 7.4 HLYBP_ECOLX
33 PsiBlast_CBE 57.1446%-104 - C2 -3NHA 6.4
55 PsiBlast_CBE 56.8445%-107 - C2 -1XEF 7.1 HLYBP_ECOLX
49 PsiBlast_CBE 56.6645%-110 - C2 -2FGJ 7.7 HLYBP_ECOLX
42 PsiBlast_CBE 56.4245%-110 - C2 -2FGK 6.8 HLYBP_ECOLX
77 PsiBlast_CBE 55.8439%-109 - C2 -2IXG 6.8
69 PsiBlast_CBE 55.8340%-108 - C2 -2IXF 7.2 TAP1_RAT
68 PsiBlast_CBE 55.5740%-109 - C2 -2IXF 7.3 TAP1_RAT
67 PsiBlast_CBE 55.4040%-107 - C2 -2IXF 7.7 TAP1_RAT
71 PsiBlast_CBE 55.0640%-104 - C2 -2IXE 7.2 TAP1_RAT
66 PsiBlast_CBE 53.0340%-108 - C2 -2IXF 7.8
57 PsiBlast_CBE 51.1843%-105 - C2 -1MV5 5.3 LMRA_LACLA
59 PsiBlast_CBE 48.8743%-100 - C2 -1MV5 6.1 LMRA_LACLA
58 PsiBlast_CBE 47.9643% -98 - C2 -1MV5 6.2 LMRA_LACLA
56 PsiBlast_CBE 42.4943% -98 - C2 -1MV5 4.8