@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1148: (2016-01-27 )
MHLTPHWIPLVASLGLLAGGSFASAAEEAFDLWNECAKACVLDLKDGVRSSRMSVDPAIADTNGQGVLHYSMVLEGGNDALKLAIDNALSITSDGLTIRLEGGVEPNKPVRYSYTRQARGSWSLNWLVPIGHEKPSNIKVFIHELNAGNQLSHMSPIYTIEMGDELLAKLARDATFFVRAHESNEMQPTLAISHAGVSVVMAQAQPRREKRWSEWASGKVLCLLDPLDGVYNYLAQQRCNLDDTWEGKIYRVLAGNPAKHDLDIKPTVISHRLHFPEGGSLAALTAHQACHLPLETFTRHRQPRGWEQLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDLGEAIREQPEQARLALTLAAAESERFVRQGTGNDEAGAASADVVSLTCPVAAGECAGPADSGDALLERNYPTGAEFLGDGGDISFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTGLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGKPPREDLK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TAD_A_7(1AER)
TOXA_PSEAE
[Raw transfer]



P34_D_4(1XK9)

[Raw transfer]



G9D_A_2(3KI0)

[Raw transfer]



18N_A_2(3ESS)

[Raw transfer]



G9P_A_2(3KI4)

[Raw transfer]



G9G_A_2(3KI2)

[Raw transfer]



V30_A_4(3NY6)

[Raw transfer]



G9F_A_2(3KI1)

[Raw transfer]



G9L_A_2(3KI6)

[Raw transfer]



AMP_B_9(1DMA)

[Raw transfer]



AMP_B_9(1AER)

[Raw transfer]
1 PsiBlast_PDB 97.2799% -99 - C8 -1IKQ - TOXA_PSEAE -
54 Fugue 97.0699%-100 - C8 -1IKP - TOXA_PSEAE -
2 PsiBlast_PDB 97.0699%-100 - C8 -1IKP - TOXA_PSEAE -
44 HHSearch 94.4896% -96 - C8 -1IKP - TOXA_PSEAE -
15 PsiBlast_PDB 72.7632% -73 - C8 -3Q9O - CHXA_VIBCL -
14 PsiBlast_PDB 72.6632% -70 - C8 -2Q5T - CHXA_VIBCL -
45 HHSearch 68.4233% -63 - C8 -3Q9O - CHXA_VIBCL -
23 PsiBlast_CBE 62.8299%-108 - C8 -1AER 4.8
29 PsiBlast_CBE 62.7599% -95 - C8 -2ZIT - -
34 PsiBlast_CBE 62.6098% -94 - C8 -3B78 - TOXA_PSEAE -
31 PsiBlast_CBE 62.5598% -94 - C8 -3B82 - -
32 PsiBlast_CBE 62.5298% -95 - C8 -3B82 - TOXA_PSEAE -
36 PsiBlast_CBE 62.4698% -96 - C8 -3B8H - TOXA_PSEAE -
3 PsiBlast_PDB 62.4699% -95 - C8 -1XK9 - TOXA_PSEAE -
6 PsiBlast_PDB 62.4499% -92 - C8 -1ZM2 - TOXA_PSEAE -
33 PsiBlast_CBE 62.4398% -95 - C8 -3B78 - -
10 PsiBlast_PDB 62.3299% -96 - C8 -2ZIT - TOXA_PSEAE -
5 PsiBlast_PDB 62.2899% -96 - C8 -1AER - TOXA_PSEAE -
35 PsiBlast_CBE 62.2298% -94 - C8 -3B8H - -
11 PsiBlast_PDB 62.1898% -97 - C8 -3B82 - TOXA_PSEAE -
55 Fugue 62.0998% -94 * C8 *1AER 7.8 TOXA_PSEAE
21 PsiBlast_CBE 61.7199% -96 - C8 -1XK9 5.1
22 PsiBlast_CBE 61.6099% -98 - C8 -1DMA 5.2
16 PsiBlast_PDB 51.5340% -69 - C8 -3KI0 5.8
39 PsiBlast_CBE 51.2540% -67 - C8 -3KI6 7.4
20 PsiBlast_PDB 51.2540% -66 - C8 -3KI4 6.1
37 PsiBlast_CBE 51.0240% -65 - C8 -3NY6 5.2
46 HHSearch 50.8239% -71 - C8 -3ESS 5.4
17 PsiBlast_PDB 50.6440% -66 - C8 -3KI1 5.9
18 PsiBlast_PDB 50.4640% -65 - C8 -3KI2 6.3