@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1174: (2016-01-27 )
MNSPRPTPPPFAAAAAGLPILVRASNLVTEADVTSLVWNKAPCRFCGTGCSVMVATRDGQVVATHGDIKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMKDGKFDKQGEFQPISWEQAFDIMAEKFKAALKAKGPESVGMFGSGQWTVWEGYAANKLFKAGLRSNNIDPNARHCMASAVMGFMRSFGMDEPMGCYDDIEATDSFVLWGSNMAEMHPVLWSRVTDRRLSAPQVKVAVLSTFEHRSFELADLPMVFKPQTDLIILNYIANHIIESGAVNRDFVERHVRFAHGAEDIGYGLRPDDPLEKKAKNADKANTWSDIDFKAFAEFVKPYTLERTARESGVPAERLKALAELYADPKRKVVSFWTMGFNQHTRGVWANNLIYNIHLLTGKISEPGNSPFSLTGQPSACGTAREVGTFSHRLPADLVVTNPKHRETAEKIWKVPAGTIQEKVGFHAVQQSRMLKDGVLNVYWTQVSNNMQAGPNVMQEVLPGWRNPDNFVIVSDVYPTVSAQAADLILPSAMWVEKEGAFGNAERRTQFWHQLVKAPGEAKSDLWQLVEFSKRFTTDEVWPAELLAKAPELKGKTLYDVLFRNGQVDRFPASDLAKGYANDEVDAFGFYIQKGLFEEYAAFGRGHGHDLAPFDAYHEARGLRWPVVDGKETRWRYREGYDPYVSKGSGVQFYGYPDKKAIVFALPYEPPAEAPDQDYPFWLATGRVLEHWHTGSMTARVPELYKAVPDALVYMHPEDARQLKLRRGSEVKVVSRRGEIRARVETRGRNKPPQGLVFVPFFDANKLINKVTLDATDPISKQTDYKKCAVRIELLNLA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MGD_A_5(3ML1)
NAPA_CUPNH
[Raw transfer]



MGD_A_6(3ML1)
NAPA_CUPNH
[Raw transfer]



MGD_A_6(3ML1)
NAPA_CUPNH
[Raw transfer]



MGD_A_5(2JIQ)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIR)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2V45)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2V3V)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIO)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIP)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIM)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2NAP)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2NAP)
NAPA_DESDA
[Raw transfer]
1 PsiBlast_PDB 97.9173% -68 - C1 -3ML1 12.1 NAPA_CUPNH
38 HHSearch 96.8672% -66 - C1 -3ML1 12.1 NAPA_CUPNH
21 PsiBlast_CBE 96.4071% -67 - C1 -2NYA - NAPA_ECOLI -
2 PsiBlast_PDB 96.2971% -66 - C1 -2NYA - NAPA_ECOLI -
3 PsiBlast_PDB 96.1971% -67 - C1 -1OGY - NAPA_RHOS4 -
28 PsiBlast_CBE 95.6271% -67 - C1 -1OGY - NAPA_RHOS4 -
22 PsiBlast_CBE 95.5171% -67 - C1 -1OGY - NAPA_RHOS4 -
11 PsiBlast_PDB 80.0036% -63 - C1 -2V45 7.5 NAPA_DESDA
6 PsiBlast_PDB 79.8336% -64 - C1 -2V3V 9.9 NAPA_DESDA
8 PsiBlast_PDB 79.6536% -62 - C1 -2JIM 9.5 NAPA_DESDA
4 PsiBlast_PDB 79.6436% -64 - C1 -2JIO 8.8 NAPA_DESDA
10 PsiBlast_PDB 79.6136% -63 - C1 -2JIR 10.0 NAPA_DESDA
7 PsiBlast_PDB 79.5136% -64 - C1 -2NAP 9.0 NAPA_DESDA
5 PsiBlast_PDB 79.4936% -63 - C1 -2JIQ 9.1 NAPA_DESDA
9 PsiBlast_PDB 79.3336% -64 - C1 -2JIP 8.7 NAPA_DESDA
39 HHSearch 78.9738% -61 - C1 -2NAP 8.9 NAPA_DESDA
29 Fugue 68.7220% -50 - C1 -1G8K - AIOA_ALCFA -
48 HHSearch 66.9221% -51 - C1 -1G8K - AIOA_ALCFA -
42 HHSearch 66.7719% -53 - C1 -2E7Z - AHY_PELAE -
31 Fugue 66.7320% -51 - C1 -2VPZ - ? -