@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1221: (2016-01-27 )
MDSFFRKKAIVRMSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSHGLAPERLLERAATPEQPLVLSRSAA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_2(4D4G)
?
[Raw transfer]



ANP_A_3(4D4I)
?
[Raw transfer]



AMP_A_2(4DG8)
?
[Raw transfer]



DG9_A_2(4DG9)
?
[Raw transfer]



DG9_A_2(4DG9)
?
[Raw transfer]



AMP_A_2(3VNS)
?
[Raw transfer]



ATP_A_2(3VNQ)
?
[Raw transfer]



GOL_A_13(3ETC)
?
[Raw transfer]



IXN_B_8(3O83)
?
[Raw transfer]
2 PsiBlast_PDB 94.27100%-114 - C2 -4DG9 9.8 ?
53 Fugue 94.1599%-113 - C2 -4DG9 9.8 ?
1 PsiBlast_PDB 86.49100%-121 - C2 -4DG8 6.9 ?
26 HHSearch 68.8329%-103 - C2 -2VSQ - SRFAC_BACSU -
6 PsiBlast_PDB 65.2630% -98 - C2 -3VNQ 7.3 ?
7 PsiBlast_PDB 64.8530% -98 - C2 -3VNS 6.1 ?
4 PsiBlast_PDB 64.7031%-104 - C2 -2VSQ - -
8 PsiBlast_PDB 63.5026%-104 - C2 -1AMU - GRSA_ANEMI -
34 HHSearch 62.8624% -95 - C2 -1AMU - GRSA_ANEMI -
55 Fugue 62.3718% -81 - C2 -1PG4 - ACSA_SALTY -
14 PsiBlast_PDB 62.2325% -94 - C2 -3E7X - DLTA_BACSU -
44 HHSearch 61.9824%-100 - C2 -3E7W - DLTA_BACSU -
11 PsiBlast_PDB 61.1426%-101 - C2 -3FCC - DLTA_BACCR -
54 Fugue 61.0024% -93 - C2 -1AMU - GRSA_ANEMI -
12 PsiBlast_PDB 60.9426%-102 - C2 -3FCE - DLTA_BACCR -
23 PsiBlast_CBE 60.9336%-109 - C2 -4GR5 - ? -
5 PsiBlast_PDB 60.9336%-108 - C2 -4GR4 - ? -
9 PsiBlast_PDB 60.9026%-102 - C2 -3DHV - DLTA_BACCR -
13 PsiBlast_PDB 60.8825% -93 - C2 -3E7W - DLTA_BACSU -
3 PsiBlast_PDB 60.8736%-106 - C2 -4GR5 - ? -