@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1279: (2016-01-28 )
MSLQWWRDTCREADPQMRRRAAERQDRLTKPRGSLGRLEQVAIDLAALQGRERPSLERIWVTVFAGDHGVVAEGISAYPQAVTGEMLRNFVRGGAAISVLARELGAGLEVVDLGTAFPLEALPGVRHLRLAAGTANFVEAPAMGAEECLLALEAGRESVRRAEQAGSQLFIGGEMGIGNTTAAAAMACALLDAPASALVGPGTGLDASGVAHKAAVIERALALHGAHRADPFETLRRLGGLEIAALAGAYLACAQKGMVALVDGYICSVAALCAVRLNPACRDWLLFAHSGAEPGHRHVLEALAAQPLLDLGLRLGEGSGAALAVPLLRQACALHAGMATFAEAAVSDRPA

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1RB_C_3(1L5K)
COBT_SALTY
[Raw transfer]




RBZ_C_3(1D0V)
COBT_SALTY
[Raw transfer]




RBZ_C_3(1D0V)
COBT_SALTY
[Raw transfer]




RMB_C_3(1JHO)
COBT_SALTY
[Raw transfer]




RBZ_C_3(1L4E)
COBT_SALTY
[Raw transfer]




PMO_C_3(1JHQ)
COBT_SALTY
[Raw transfer]




RBZ_A_2(4KQI)
COBT_SALTY
[Raw transfer]




7RP_C_3(1L5L)
COBT_SALTY
[Raw transfer]




NCN_E_5(1L5O)
COBT_SALTY
[Raw transfer]




AAM_C_3(1JHA)
COBT_SALTY
[Raw transfer]




NCN_A_2(4KQJ)
COBT_SALTY
[Raw transfer]




NIO_G_7(1JHV)
COBT_SALTY
[Raw transfer]




NIO_G_7(1L4N)
COBT_SALTY
[Raw transfer]




NIO_G_7(1JHY)
COBT_SALTY
[Raw transfer]




NIO_A_4(4KQI)
COBT_SALTY
[Raw transfer]




IPH_A_3(4HDS)
?
[Raw transfer]




DMD_A_5(4HDR)
?
[Raw transfer]




DMD_C_12(4HDR)
?
[Raw transfer]




PCR_A_5(4KQK)
COBT_SALTY
[Raw transfer]




PCR_A_3(4HDM)
?
[Raw transfer]




13X_A_4(4HDK)
?
[Raw transfer]




PCR_G_7(1JHU)
COBT_SALTY
[Raw transfer]




45 HHSearch 94.2750%-118 - C7 -1WX1 - COBT_THET8 -
1 PsiBlast_PDB 93.8650%-120 - C7 -1WX1 - COBT_THET8 -
4 PsiBlast_PDB 93.7639%-111 - C7 -4KQK 2.5 COBT_SALTY
3 PsiBlast_PDB 92.8439%-112 - C7 -4KQJ 5.2 COBT_SALTY
2 PsiBlast_PDB 92.4150%-116 - C7 -1J33 - COBT_THET8 -
13 PsiBlast_PDB 91.3338%-110 - C7 -1JHX - COBT_SALTY -
56 Fugue 91.3035%-110 - C7 -1JHU 3.0 COBT_SALTY
22 PsiBlast_CBE 90.9738%-110 - C7 -1L5N - COBT_SALTY -
55 Fugue 90.9035%-108 - C7 -1JH8 - COBT_SALTY -
7 PsiBlast_PDB 90.8538%-110 - C7 -1JHM - COBT_SALTY -
25 PsiBlast_CBE 90.7338%-111 - C7 -1L5F - COBT_SALTY -
26 PsiBlast_CBE 90.7238%-113 - C7 -1L4N 2.6 COBT_SALTY
14 PsiBlast_PDB 90.6938%-112 - C7 -1JHY 2.7 COBT_SALTY
12 PsiBlast_PDB 90.6738%-110 - C7 -1JHV 2.8 COBT_SALTY
18 PsiBlast_PDB 90.6538%-111 - C7 -1L4G - COBT_SALTY -
16 PsiBlast_PDB 90.5638%-111 - C7 -1L4E 4.9 COBT_SALTY
57 Fugue 90.4335%-111 * C7 *1D0V 4.4 COBT_SALTY
21 PsiBlast_CBE 90.4338%-109 - C7 -1L5O 5.7 COBT_SALTY
11 PsiBlast_PDB 90.4038%-110 - C7 -1JHU - COBT_SALTY -
23 PsiBlast_CBE 90.3338%-110 - C7 -1L5L 5.4 COBT_SALTY
10 PsiBlast_PDB 90.2438%-111 - C7 -1JHQ 4.9 COBT_SALTY
6 PsiBlast_PDB 90.2238%-110 - C7 -1JHA 4.1 COBT_SALTY
8 PsiBlast_PDB 90.1638%-111 - C7 -1JHO 5.2 COBT_SALTY
24 PsiBlast_CBE 89.7638%-111 - C7 -1L5K 4.5 COBT_SALTY
29 PsiBlast_CBE 89.6738%-111 - C7 -1D0V 4.4 COBT_SALTY
31 PsiBlast_CBE 89.1138%-113 - C7 -4KQI 5.8 COBT_SALTY
36 PsiBlast_CBE 87.5634%-113 - C7 -4HDR 3.6 ?
38 PsiBlast_CBE 87.3834%-112 - C7 -4HDM 2.6 ?
37 PsiBlast_CBE 87.1634%-114 - C7 -4HDR 3.0 ?
35 PsiBlast_CBE 86.9434%-109 - C7 -4HDS 3.1 ?
39 PsiBlast_CBE 85.7834%-111 - C7 -4HDK 4.0 ?