@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1337: (2016-01-28 )
MKPLLHAFAPGVMALMLLLPQAAQAKEVAPQQKLSNVVILATGGTIAGAGASAANSATYTAAKVPVDQLLASVPQLKDIANVRGEQVFQIASESFTNENLLELGKTVAKLADSDDVDGIVITHGTDTLEETAYFLTLVEHTEKPIVVVGSMRPGTAMSADGMLNLYNAVAVAGDKSARGKGVLITMNDEILSGRDASKMVNIKTEAFKSPWGPLGMVVEGKSYWFRAPVKRHTVNSEFDIKQISALAPVEIAYSYGNVSDTAYKALAQAGAKAIIHAGTGNGSVPARVVPTLQELRKQGVQIIRSSHVNAGGFVLRNAEQPDDKNDWIVAHDLNPQKARILAAVAMTKTQDSKELQRIFWEY

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_A_2(2WLT)
ASPG_HELPJ
[Raw transfer]



ASP_A_2(2WLT)
ASPG_HELPJ
[Raw transfer]



ASP_H_8(3ECA)
ASPG2_ECOLI
[Raw transfer]



ASP_A_2(2WT4)
ASPG_HELPJ
[Raw transfer]



ASP_E_5(1NNS)
ASPG2_ECOLI
[Raw transfer]



ASP_E_5(1NNS)
ASPG2_ECOLI
[Raw transfer]



DAS_C_7(1HG1)
ASPG_DICCH
[Raw transfer]



DAS_B_6(1HG1)
ASPG_DICCH
[Raw transfer]



SIN_A_5(1HG0)
ASPG_DICCH
[Raw transfer]



CAB_A_7(1DJO)
ASPQ_PSES7
[Raw transfer]



SIN_C_7(1HG0)
ASPG_DICCH
[Raw transfer]



GLU_C_7(1HFW)
ASPG_DICCH
[Raw transfer]



ASP_F_6(3ECA)
ASPG2_ECOLI
[Raw transfer]



SIN_D_8(1HG0)
ASPG_DICCH
[Raw transfer]



ASP_G_7(1NNS)
ASPG2_ECOLI
[Raw transfer]



ASP_E_5(3ECA)
ASPG2_ECOLI
[Raw transfer]



ASP_G_7(3ECA)
ASPG2_ECOLI
[Raw transfer]



SIN_B_6(1HG0)
ASPG_DICCH
[Raw transfer]



GLU_A_5(1HFW)
ASPG_DICCH
[Raw transfer]



CAB_B_5(1DJO)
ASPQ_PSES7
[Raw transfer]



GLU_B_6(1HFW)
ASPG_DICCH
[Raw transfer]



DDO_C_7(1JSL)
ASPG_DICCH
[Raw transfer]



ASP_G_7(1HO3)
ASPG2_ECOLI
[Raw transfer]



DDO_A_5(1JSL)
ASPG_DICCH
[Raw transfer]



ASP_E_5(1HO3)
ASPG2_ECOLI
[Raw transfer]



DO2_B_7(1DJP)
ASPQ_PSES7
[Raw transfer]



DDO_B_6(1JSL)
ASPG_DICCH
[Raw transfer]



DAS_D_8(1HG1)
ASPG_DICCH
[Raw transfer]



DO2_A_5(1DJP)
ASPQ_PSES7
[Raw transfer]
2 PsiBlast_PDB 98.9384% -93 - C8 -1DJO 2.3 ASPQ_PSES7
1 PsiBlast_PDB 98.8184% -95 - C8 -4PGA - ASPQ_PSES7 -
21 PsiBlast_CBE 98.7384% -95 - C8 -4PGA - ASPQ_PSES7 -
23 PsiBlast_CBE 98.3884% -93 - C8 -1DJO 2.1 ASPQ_PSES7
22 PsiBlast_CBE 98.0884% -90 - C8 -1DJP 1.3 ASPQ_PSES7
3 PsiBlast_PDB 98.0884% -93 - C8 -1DJP 2.5 ASPQ_PSES7
4 PsiBlast_PDB 91.2161% -89 - C8 -1AGX - ASPQ_ACIGL -
90 HHSearch 90.4561% -86 - C8 -1AGX - ASPQ_ACIGL -
18 PsiBlast_PDB 86.4244% -88 - C8 -3NXK - ? -
73 PsiBlast_CBE 85.9643% -97 - C8 -2JK0 - ? -
93 HHSearch 85.7245% -86 - C8 -3NXK - ? -
66 PsiBlast_CBE 85.3943% -97 - C8 -2GVN - ? -
89 HHSearch 84.9748% -85 - C8 -1NNS 3.1 ASPG2_ECOLI
60 PsiBlast_CBE 84.9743% -96 - C8 -2GVN - ? -
17 PsiBlast_PDB 84.9642% -94 - C8 -1HFW 3.2 ASPG_DICCH
70 PsiBlast_CBE 84.8543% -96 - C8 -2JK0 - ? -
8 PsiBlast_PDB 84.8448% -82 - C8 -1NNS 3.1 ASPG2_ECOLI
27 PsiBlast_CBE 84.7748% -82 - C8 -1NNS 3.3 ASPG2_ECOLI
62 PsiBlast_CBE 84.7243% -98 - C8 -2GVN - ? -
47 PsiBlast_CBE 84.6642% -92 - C8 -1HFJ - ASPG_DICCH -
45 PsiBlast_CBE 84.6342% -96 - C8 -1HFW 3.6 ASPG_DICCH
15 PsiBlast_PDB 84.6242% -88 - C8 -1JSL 1.5 ASPG_DICCH
26 PsiBlast_CBE 84.4948% -80 - C8 -3ECA 3.3 ASPG2_ECOLI
7 PsiBlast_PDB 84.1548% -77 - C8 -3ECA 2.9 ASPG2_ECOLI
44 PsiBlast_CBE 84.0342% -89 - C8 -1HG0 3.8 ASPG_DICCH
41 PsiBlast_CBE 84.0242% -92 - C8 -1HG1 4.8 ASPG_DICCH
14 PsiBlast_PDB 84.0242% -89 - C8 -1HG0 2.9 ASPG_DICCH
42 PsiBlast_CBE 83.9942% -89 - C8 -1HG0 2.8 ASPG_DICCH
40 PsiBlast_CBE 83.9942% -93 - C8 -1HG1 4.3 ASPG_DICCH
25 PsiBlast_CBE 83.8648% -79 - C8 -3ECA 3.1 ASPG2_ECOLI
19 PsiBlast_PDB 83.7741% -83 - C8 -2WLT 4.4 ASPG_HELPJ
43 PsiBlast_CBE 83.7242% -90 - C8 -1HG0 3.0 ASPG_DICCH
37 PsiBlast_CBE 83.7242% -86 - C8 -1JSL 2.2 ASPG_DICCH
24 PsiBlast_CBE 83.5748% -83 - C8 -3ECA 3.0 ASPG2_ECOLI
39 PsiBlast_CBE 83.4742% -91 - C8 -1HG1 4.6 ASPG_DICCH
38 PsiBlast_CBE 83.4042% -87 - C8 -1JSL 1.9 ASPG_DICCH
46 PsiBlast_CBE 83.3942% -93 - C8 -1HFW 3.7 ASPG_DICCH
28 PsiBlast_CBE 82.9747% -79 - C8 -1HO3 2.5 ASPG2_ECOLI
92 HHSearch 82.7441% -84 - C8 -2WLT 4.4 ASPG_HELPJ
9 PsiBlast_PDB 82.4547% -79 - C8 -1HO3 3.1 ASPG2_ECOLI
20 PsiBlast_PDB 82.2741% -83 - C8 -2WT4 4.5 ASPG_HELPJ