@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1400: (2016-01-29 )
MTAPFNALLIANRGEIAIRIARACADLGIRSVAVFAEDDAASLHVRKADVALPLAGRGVAAYLDMDRLVALALEQGCEAIHPGYGFLAENGEFARRCQRAGIHFVGPQAEVLDLFGDKAAARALAERLEVPLVAGINRAVSVEEAEAFLEGLGDGAAVMLKALAGGGGRGMRAVEEVAQLADAYRRCRAEAQAAFGRDELYVEQRVARARHIEVQVLGDGSGAVSHLWERDCSLQRRQQKLLEIAPSPDLPEATREALIDCALRMAGAVRYRGIGTFEFLVDDERPGRFYFMEANPRIQVEHTVTEEVTGVDLLHAQLRLAAGMELAALGLERPPAIGGCAVQLRINLETLAADGSARPAVGTIGAYEPPSGPGLRVDGYGYAGYRVSPSYDSLLAKLVVRGADYPAALRRAYRALCEFRLEGVASNLDLLRNLLLHPAVQANRVDTRFVESHLETLLAPIPASHPRLRAECPLAEDAAPARVEAPLGSLPLSAPSSGVLVALEVADGERVRAGQRVAILEAMKMEFEVKAPGGGIVRRLAASLGEPLEEGATLLFLEPTEDDDEQAPTEQALDLAHIRADLAEVLERQAALGDERRPQALARRRKTGQRTARENVLDLLDEGSFSEYGGFALAAQRRRRSAEELLELSPADGLVAGTGTVGAASFGVQAARCLVLAYDYTVFAGTQGVMNHKKTDRLLGLAEQWRLPLVLFAEGGGGRPGDTDFVGVAGLDCHTFVGMARLSGLVPLVGVVSGRCFAGNAALLGCCDVIIATRDATIGMAGPAMIEGGGLGRFAAEEVGPTGVQGPNGVIDVLVEDEAEAVAVARRYLGYFQGPLPDWSCADQRELRHLVPENRLRAYDIRQAIEVLADRGSVLELRRQFAPGLVTALLRIEGRAFGLIANNPGHLGGAIDAAAGDKAARFMQLCDAFDIPIVSLCDTPGFMVGPEAEKQATVRHVSRMFVSAASLTVPFFTVVLRKGYGLGAQAMAAGSFHSPLFTVAWPSGEFGAMGLEGAVRLGFAKELAAEEDPQRREALFRGMVDKAYRNGKALNMASYLEIDAVIDPAETRAWLLRGLAVAGEPAPRAGRKRPFVDTW

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(1DV2)
ACCC_ECOLI
[Raw transfer]



ANP_A_5(2J9G)
ACCC_ECOLI
[Raw transfer]



ADP_B_7(3G8C)
ACCC_ECOLI
[Raw transfer]



ANP_A_3(2VPQ)
?
[Raw transfer]



ATF_A_4(2VR1)
ACCC_ECOLI
[Raw transfer]



ANP_A_3(2VPQ)
?
[Raw transfer]



ANP_B_7(2VPQ)
?
[Raw transfer]



ADP_B_8(2J9G)
ACCC_ECOLI
[Raw transfer]



ATP_B_4(1DV2)
ACCC_ECOLI
[Raw transfer]



ADP_A_4(3RUP)
ACCC_ECOLI
[Raw transfer]



ADP_A_8(3OUZ)
?
[Raw transfer]



ADP_A_4(3RV3)
ACCC_ECOLI
[Raw transfer]



ADP_A_2(3RV4)
ACCC_ECOLI
[Raw transfer]



AP2_A_2(2VQD)
ACCC_PSEAE
[Raw transfer]



ADP_A_3(3G8C)
ACCC_ECOLI
[Raw transfer]



ADP_B_4(3G8D)
ACCC_ECOLI
[Raw transfer]



JZL_A_3(3JZI)
ACCC_ECOLI
[Raw transfer]



JZL_B_4(3JZI)
ACCC_ECOLI
[Raw transfer]



LZL_A_3(2V5A)
ACCC_ECOLI
[Raw transfer]



LZK_B_4(2V59)
ACCC_ECOLI
[Raw transfer]



JZK_B_4(3JZF)
ACCC_ECOLI
[Raw transfer]



OA4_A_3(2W6P)
ACCC_ECOLI
[Raw transfer]



OA2_A_3(2W6N)
ACCC_ECOLI
[Raw transfer]



LZK_A_3(2V59)
ACCC_ECOLI
[Raw transfer]



OA2_B_5(2W6N)
ACCC_ECOLI
[Raw transfer]



LZJ_B_5(2V58)
ACCC_ECOLI
[Raw transfer]



L23_A_4(2W71)
ACCC_ECOLI
[Raw transfer]



LZJ_A_3(2V58)
ACCC_ECOLI
[Raw transfer]



OA5_B_5(2W6Q)
ACCC_ECOLI
[Raw transfer]



OA5_A_3(2W6Q)
ACCC_ECOLI
[Raw transfer]



L23_C_6(2W71)
ACCC_ECOLI
[Raw transfer]



L22_A_3(2W70)
ACCC_ECOLI
[Raw transfer]



L22_B_5(2W70)
ACCC_ECOLI
[Raw transfer]



ADP_B_9(3RUP)
ACCC_ECOLI
[Raw transfer]



ADP_A_3(3RUP)
ACCC_ECOLI
[Raw transfer]



ADP_A_3(3RV3)
ACCC_ECOLI
[Raw transfer]



OA3_A_3(2W6O)
ACCC_ECOLI
[Raw transfer]



OA3_C_5(2W6O)
ACCC_ECOLI
[Raw transfer]



ADP_B_7(3RV3)
ACCC_ECOLI
[Raw transfer]



Y7Y_A_2(4RZQ)
ACCC_HAEIN
[Raw transfer]
1 PsiBlast_PDB 94.4553%-107 - C2 -4RCN - ? -
140 HHSearch 66.2942% -96 - C2 -3U9T - ? -
146 HHSearch 61.6243% -98 - C2 -2DZD - ? -
10 PsiBlast_PDB 61.3042% -99 - C2 -2DZD - ? -
139 HHSearch 61.0936% -92 - C2 -3N6R - ? -
49 PsiBlast_CBE 60.8540% -91 - C2 -2VPQ 5.6 ?
2 PsiBlast_PDB 60.4543%-113 - C2 -4QSK - ? -
21 PsiBlast_CBE 60.2143%-112 - C2 -4QSK - ? -
149 HHSearch 60.0543% -94 - C2 -1ULZ - ? -
82 PsiBlast_CBE 60.0541%-100 - C2 -1DV1 - ACCC_ECOLI -
17 PsiBlast_PDB 59.5842% -93 - C2 -2C00 - ACCC_PSEAE -
22 PsiBlast_CBE 59.5543%-114 - C2 -4QSH - ? -
15 PsiBlast_PDB 59.5442% -94 - C2 -1ULZ - ? -
68 PsiBlast_CBE 59.5041% -95 - C2 -2W6N 4.6 ACCC_ECOLI
58 PsiBlast_CBE 59.4541% -95 - C2 -2W71 6.0 ACCC_ECOLI
67 PsiBlast_CBE 59.4341% -97 - C2 -2W6O 3.8 ACCC_ECOLI
97 PsiBlast_CBE 59.3640% -96 - C2 -3G8D - ACCC_ECOLI -
66 PsiBlast_CBE 59.2341% -95 - C2 -2W6O 3.6 ACCC_ECOLI
54 PsiBlast_CBE 59.1741% -99 - C2 -4HR7 - ACCC_ECOLI -
62 PsiBlast_CBE 59.1641% -95 - C2 -2W6Z - ACCC_ECOLI -
75 PsiBlast_CBE 59.1541% -95 - C2 -2V5A 4.8 ACCC_ECOLI
90 PsiBlast_CBE 59.1041% -94 - C2 -3JZF 8.5 ACCC_ECOLI
86 PsiBlast_CBE 59.0741% -92 - C2 -3RUP 6.9 ACCC_ECOLI
95 PsiBlast_CBE 59.0640% -92 - C2 -3RV4 7.0 ACCC_ECOLI
96 PsiBlast_CBE 58.9340% -95 - C2 -3G8D 4.3 ACCC_ECOLI
147 HHSearch 58.7638% -92 - C2 -3OUZ 5.1 ?
88 PsiBlast_CBE 58.7541% -94 - C2 -3JZI 8.4 ACCC_ECOLI
73 PsiBlast_CBE 58.7541% -97 - C2 -2VR1 5.4 ACCC_ECOLI
64 PsiBlast_CBE 58.6841% -95 - C2 -2W6Q 3.6 ACCC_ECOLI
60 PsiBlast_CBE 58.6241% -95 - C2 -2W70 3.3 ACCC_ECOLI
87 PsiBlast_CBE 58.5441% -91 - C2 -3RUP 7.2 ACCC_ECOLI
63 PsiBlast_CBE 58.4941% -95 - C2 -2W6Q 4.6 ACCC_ECOLI
145 HHSearch 58.4141% -86 - C2 -2VPQ 6.3 ?
51 PsiBlast_CBE 58.3341% -94 - C2 -3G8C 5.9 ACCC_ECOLI
76 PsiBlast_CBE 58.2041% -94 - C2 -2V59 4.4 ACCC_ECOLI
59 PsiBlast_CBE 58.1841% -94 - C2 -2W70 3.8 ACCC_ECOLI
16 PsiBlast_PDB 58.1742% -84 - C2 -2VQD 7.2 ACCC_PSEAE
18 PsiBlast_PDB 58.1640% -88 - C2 -2VPQ 6.3 ?
69 PsiBlast_CBE 58.1341% -95 - C2 -2W6N 4.7 ACCC_ECOLI
52 PsiBlast_CBE 58.1141% -92 - C2 -3G8C 5.6 ACCC_ECOLI
77 PsiBlast_CBE 58.0641% -94 - C2 -2V59 4.0 ACCC_ECOLI
79 PsiBlast_CBE 57.9841% -94 - C2 -2V58 5.0 ACCC_ECOLI
57 PsiBlast_CBE 57.9041% -96 - C2 -2W71 6.2 ACCC_ECOLI
78 PsiBlast_CBE 57.8141% -94 - C2 -2V58 5.2 ACCC_ECOLI
81 PsiBlast_CBE 57.6941% -94 - C2 -2J9G 5.1 ACCC_ECOLI
65 PsiBlast_CBE 57.5341% -94 - C2 -2W6P 4.1 ACCC_ECOLI
85 PsiBlast_CBE 57.5141% -93 - C2 -3RV3 7.7 ACCC_ECOLI
89 PsiBlast_CBE 57.3941% -93 - C2 -3JZI 8.3 ACCC_ECOLI
84 PsiBlast_CBE 57.3841% -93 - C2 -3RV3 6.3 ACCC_ECOLI
94 PsiBlast_CBE 57.2340% -91 - C2 -1DV2 5.0 ACCC_ECOLI
93 PsiBlast_CBE 56.8140% -93 - C2 -1DV2 4.0 ACCC_ECOLI
80 PsiBlast_CBE 56.2841% -96 - C2 -2J9G 6.7 ACCC_ECOLI
92 PsiBlast_CBE 55.8241% -87 - C2 -4RZQ 3.7 ACCC_HAEIN