@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1429: (2016-01-29 )
MNGIPPLSSRDAHASPPQRVLERLHSSAAGLDADEAARRLAAHGYNRLPAPKRQGPLLRLLRQFHNVLLYMMLFASLVTALLGFWVDSAVILLAVVVNALIGFVQEGKAANALDAIRDMLSLHALVLRDGQRQALDAERLVPGDVVLLASGDRVPADLRLFETKNFHVDESALTGESVPVEKGCVAVAIDALLGDRRCMAYSGTLVTSGQARGVVVATAGDTELGRIGTLLREVRTLATPLLRQIASFSRWLALAILLLAGATFVLGTLWQGQPMVDMFMLVVALTASAIPEGLPAIMTVILALGVQRMARRNAIVSRLPAVETLGSVTVICSDKTGTLTRNEMTVQRIVTADQVIEVSGAGYAPLGGFSHNGEGLDPAGRDDLQEIGRAALLCNEARLHQEGEAWQLEGDPTEGALLSLGLKLGLDPQALAAERPRSDAIPFESEHRFMATLHHDHAGQAMVYLKGAPERILDMCEAERVGDSVRPLDPDYWRRLATDTAARGLRLLAIARRAMPAEQRTLDFADVEHGFTLLALVGIIDPPREEAVAAVAECQAAGIAVKMITGDHVDTARAIGAMLGIGIDRPALTGAEIELLDDQRLREVLPGVDVFARASPEHKLRLVQALQASGEVVAMTGDGVNDAPALKRADVGVAMGNKGTEAAKEAAEVVLADDNFATIANAVREGRAVYDNLKKFILFMLPTNGGEALIVIAAILFQLTLPMTPAQILWINMVTSSTLGLALAFDPAERGLMQRPPRPPAEPLLSLFFVWRVLLVSLLMMAGALGLFLWELEHGTGLESARTMAVNSVVVCEMFYLLNSRHIYDSVLSREGLFGNRQVLLAIAACVMLQLLYTYAPPLQALFGSVGLAPGEWARVLLAGLGLFCVAELEKWLCRRVRARQA

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_6(3TLM)
AT2A1_BOVIN
[Raw transfer]




ACP_A_6(1T5S)
AT2A1_RABIT
[Raw transfer]




ACP_A_6(3N8G)
AT2A1_RABIT
[Raw transfer]




ACP_A_5(4XOU)
AT2A1_RABIT
[Raw transfer]




ADP_A_8(1T5T)
AT2A1_RABIT
[Raw transfer]




TM1_A_5(3W5B)
AT2A1_RABIT
[Raw transfer]




128_A_4(3AR7)
AT2A1_RABIT
[Raw transfer]




ADP_A_5(3FPS)
AT2A1_RABIT
[Raw transfer]




ADP_A_4(2OA0)
AT2A1_RABIT
[Raw transfer]




ACP_A_3(2C88)
AT2A1_RABIT
[Raw transfer]




TM1_A_4(3AR5)
AT2A1_RABIT
[Raw transfer]




ACP_A_3(2C8K)
AT2A1_RABIT
[Raw transfer]




ACP_A_3(2BY4)
AT2A1_RABIT
[Raw transfer]




ADP_A_7(2ZBD)
?
[Raw transfer]




ACP_B_5(3A1C)
?
[Raw transfer]




ACP_B_5(3A1E)

[Raw transfer]




ACP_A_3(3A1C)
?
[Raw transfer]




ACP_A_4(3AR2)
?
[Raw transfer]




ACP_A_3(3A1E)
COPA_ARCFU
[Raw transfer]




ADP_A_3(3A1D)
?
[Raw transfer]




ADP_B_5(3A1D)
?
[Raw transfer]




MF4_A_3(3FPB)
AT2A1_RABIT
[Raw transfer]




MF4_A_4(2O9J)
AT2A1_RABIT
[Raw transfer]




ACP_A_8(4UU1)
AT2A1_RABIT
[Raw transfer]




TBU_A_6(4UU0)
AT2A1_RABIT
[Raw transfer]




122 Fugue 91.6536%-106 - C1 -1SU4 - AT2A1_RABIT -
66 PsiBlast_CBE 91.3733% -94 - C1 -4BEW - AT2A1_RABIT -
35 PsiBlast_CBE 91.0233% -95 - C1 -3N5K - AT2A1_RABIT -
16 PsiBlast_PDB 90.9433% -97 - C1 -2O9J 2.8 AT2A1_RABIT
21 PsiBlast_CBE 90.9033%-100 - C1 -4YCL - AT2A1_RABIT -
54 PsiBlast_CBE 90.8633%-100 - C1 -2YFY - ? -
60 PsiBlast_CBE 90.7733% -96 - C1 -1WPG - AT2A1_RABIT -
8 PsiBlast_PDB 90.7433% -97 - C1 -1WPG - AT2A1_RABIT -
34 PsiBlast_CBE 90.6333% -97 - C1 -3N5K - ? -
17 PsiBlast_PDB 90.4233%-101 - C1 -2OA0 4.2 AT2A1_RABIT
39 PsiBlast_CBE 90.4133% -95 - C1 -3FGO - AT2A1_RABIT -
30 PsiBlast_CBE 90.3833%-100 - C1 -3NAN - ? -
31 PsiBlast_CBE 90.3633%-102 - C1 -3NAM - ? -
32 PsiBlast_CBE 90.3433% -99 - C1 -3NAL - ? -
65 PsiBlast_CBE 90.2733% -97 - C1 -4BEW - ? -
38 PsiBlast_CBE 90.2733% -95 - C1 -3FGO - ? -
62 PsiBlast_CBE 90.2533% -98 - C1 -1WPG - AT2A1_RABIT -
20 PsiBlast_PDB 90.2533% -99 - C1 -2EAU - AT2A1_RABIT -
61 PsiBlast_CBE 90.2233% -97 - C1 -1WPG - AT2A1_RABIT -
25 PsiBlast_CBE 90.1533% -99 - C1 -4J2T - AT2A1_RABIT -
37 PsiBlast_CBE 90.0333% -99 - C1 -3FPB 2.9 AT2A1_RABIT
12 PsiBlast_PDB 89.7433%-100 - C1 -2C88 4.4 AT2A1_RABIT
13 PsiBlast_PDB 89.6633%-102 - C1 -2C8K 3.7 AT2A1_RABIT
1 PsiBlast_PDB 89.6333%-106 - C1 -3W5B 5.6 AT2A1_RABIT
5 PsiBlast_PDB 89.5133% -99 - C1 -1T5S 7.0 AT2A1_RABIT
36 PsiBlast_CBE 89.3233% -99 - C1 -3FPS 4.5 AT2A1_RABIT
67 PsiBlast_CBE 89.2933%-100 - C1 -3TLM 6.6 AT2A1_BOVIN
22 PsiBlast_CBE 89.1233% -96 - C1 -4XOU 7.3 AT2A1_RABIT
6 PsiBlast_PDB 89.0333% -99 - C1 -1T5T 6.5 AT2A1_RABIT
33 PsiBlast_CBE 88.9133% -98 - C1 -3N8G 6.8 AT2A1_RABIT
11 PsiBlast_PDB 88.3933% -98 - C1 -2BY4 4.1 AT2A1_RABIT
24 PsiBlast_CBE 72.4333% -38 - C1 -4UU0 1.7 AT2A1_RABIT
48 PsiBlast_CBE 72.2433% -42 - C1 -3AR2 3.2 ?
43 PsiBlast_CBE 72.2233% -37 - C1 -3AR7 1.9 AT2A1_RABIT
53 PsiBlast_CBE 71.9833% -40 - C1 -2ZBD 1.8 ?
45 PsiBlast_CBE 71.4433% -38 - C1 -3AR5 2.8 AT2A1_RABIT
23 PsiBlast_CBE 70.9133% -38 - C1 -4UU1 1.8 AT2A1_RABIT
81 PsiBlast_CBE 42.2233% -33 - C1 -3A1C 2.3 ?
76 PsiBlast_CBE 42.0533% -29 - C1 -3A1E 2.1
79 PsiBlast_CBE 41.9433% -33 - C1 -3A1D 2.8 ?
78 PsiBlast_CBE 41.5333% -32 - C1 -3A1D 3.3 ?
77 PsiBlast_CBE 41.0033% -32 - C1 -3A1E 3.5 COPA_ARCFU
80 PsiBlast_CBE 39.4233% -33 - C1 -3A1C 2.7 ?