@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1529: (2016-01-30 )
MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNATLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDRGLVASPADLYTLTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVAR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3BA_A_7(3BAA)
DNLJ_ENTFA
[Raw transfer]




3BD_A_7(3BAB)
DNLJ_ENTFA
[Raw transfer]




0OW_A_5(4EFB)
DNLJ_ENTFA
[Raw transfer]




3B8_A_6(3BA8)
DNLJ_ENTFA
[Raw transfer]




IVH_A_2(3PN1)
DNLJ_HAEIN
[Raw transfer]




AMP_D_10(2OWO)
DNLJ_ECOLI
[Raw transfer]




0OV_A_5(4EFE)
DNLJ_ENTFA
[Raw transfer]




0OX_A_5(4EEQ)
DNLJ_ENTFA
[Raw transfer]




3B9_A_7(3BA9)
DNLJ_ENTFA
[Raw transfer]




0XS_A_7(4GLX)
DNLJ_ECOLI
[Raw transfer]




3B9_A_5(3BAC)
DNLJ_HAEIN
[Raw transfer]




0XT_B_6(4GLW)
DNLJ_STRZP
[Raw transfer]




AMP_B_2(1ZAU)
DNLJ_MYCTU
[Raw transfer]




0XT_A_4(4GLW)
DNLJ_STRZP
[Raw transfer]




AMP_B_2(1ZAU)
DNLJ_MYCTU
[Raw transfer]




AMP_A_3(3UQ8)
DNLJ_HAEIN
[Raw transfer]




GOL_E_5(1TA8)
DNLJ_ENTFA
[Raw transfer]




AMP_A_5(1DGS)
DNLJ_THEFI
[Raw transfer]




AMP_A_3(3UQ8)
DNLJ_HAEIN
[Raw transfer]




L5Y_A_3(4CC6)
DNLJ_STAAU
[Raw transfer]




1X8_A_2(4LH7)
DNLJ_ENTFA
[Raw transfer]




AMP_A_2(3SGI)
DNLJ_MYCTU
[Raw transfer]




AMP_A_2(3SGI)
DNLJ_MYCTU
[Raw transfer]




1X7_A_2(4LH6)
DNLJ_ENTFA
[Raw transfer]




AMP_A_5(1DGS)
DNLJ_THEFI
[Raw transfer]




AMP_B_6(1DGS)
DNLJ_THEFI
[Raw transfer]




L5V_A_3(4CC5)
DNLJ_STAAU
[Raw transfer]




NACID_D_3(4GLX)
DNLJ_ECOLI
[Raw transfer]

-

NACID_D_3(2OWO)
DNLJ_ECOLI
[Raw transfer]

-

NACID_D_3(2OWO)
DNLJ_ECOLI
[Raw transfer]

-

NACID_C_2(4GLX)
DNLJ_ECOLI
[Raw transfer]

-

NACID_C_2(2OWO)
DNLJ_ECOLI
[Raw transfer]

-

34 HHSearch 89.7457% -92 - C4 -2OWO 6.2 DNLJ_ECOLI
1 PsiBlast_PDB 88.7155% -94 - C4 -2OWO 6.9 DNLJ_ECOLI
2 PsiBlast_PDB 88.6955% -97 - C4 -4GLX 6.7 DNLJ_ECOLI
22 PsiBlast_CBE 76.0242% -77 - C4 -1DGS 4.5 DNLJ_THEFI
5 PsiBlast_PDB 75.7742% -76 - C4 -1DGS 4.1 DNLJ_THEFI
57 Fugue 74.7443% -68 - C4 -1DGS 5.1 DNLJ_THEFI
21 PsiBlast_CBE 72.6945% -76 - C4 -1V9P - DNLJ_THEFI -
4 PsiBlast_PDB 72.2345% -81 - C4 -1V9P - DNLJ_THEFI -
7 PsiBlast_PDB 58.1154% -59 - C4 -3PN1 7.0 DNLJ_HAEIN
3 PsiBlast_PDB 57.7641% -53 - C4 -3SGI 4.5 DNLJ_MYCTU
36 HHSearch 57.5757% -56 - C4 -3UQ8 6.4 DNLJ_HAEIN
6 PsiBlast_PDB 57.1656% -57 - C4 -3UQ8 6.4 DNLJ_HAEIN
35 HHSearch 56.6542% -50 - C4 -3SGI 4.5 DNLJ_MYCTU
15 PsiBlast_PDB 56.3047% -57 - C4 -4EEQ 5.0 DNLJ_ENTFA
16 PsiBlast_PDB 55.3047% -58 - C4 -4EFB 6.1 DNLJ_ENTFA
11 PsiBlast_PDB 55.2947% -57 - C4 -3BA9 8.3 DNLJ_ENTFA
14 PsiBlast_PDB 55.2447% -57 - C4 -1TA8 2.3 DNLJ_ENTFA
17 PsiBlast_PDB 55.1747% -56 - C4 -4EFE 7.0 DNLJ_ENTFA
12 PsiBlast_PDB 55.0447% -56 - C4 -3BAA 7.9 DNLJ_ENTFA
10 PsiBlast_PDB 54.8647% -59 - C4 -3BA8 6.3 DNLJ_ENTFA
13 PsiBlast_PDB 54.8447% -57 - C4 -3BAB 8.2 DNLJ_ENTFA
18 PsiBlast_PDB 54.6647% -55 - C4 -4LH6 4.6 DNLJ_ENTFA
19 PsiBlast_PDB 53.9447% -55 - C4 -4LH7 4.5 DNLJ_ENTFA
38 HHSearch 52.6347% -51 - C4 -1ZAU 4.8 DNLJ_MYCTU
27 PsiBlast_CBE 52.3645% -51 - C4 -4CC5 4.2 DNLJ_STAAU
26 PsiBlast_CBE 51.6645% -53 - C4 -4CC6 7.0 DNLJ_STAAU
30 PsiBlast_CBE 51.5946% -52 - C4 -1ZAU 4.8 DNLJ_MYCTU
31 PsiBlast_CBE 49.9941% -53 - C4 -4GLW 3.4 DNLJ_STRZP
20 PsiBlast_PDB 49.6456% -58 - C4 -3BAC 8.5 DNLJ_HAEIN
32 PsiBlast_CBE 48.9241% -49 - C4 -4GLW 3.7 DNLJ_STRZP