@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1535: (2016-01-30 )
MTDFQQYFDESHQLIRDSVRRFVEREVLPYIDEWEEAEEFPRELYLKAGAAGILGIGYPEAYGGSCEGDLFAKVAASEELMRCGSGGLVAGLGSLDIGLPPVVKWARPEVRERVVPAVLRGEKIMALAVTEPSGGSDVANLKTRAVRDGDHYRVSGSKTFITSGVRADYYTVAVRTGGEGFAGISLLLVEKGTAGFSVGRKLKKMGWWASDTAELFFDDCRVPAENLIGVENAGFACIMANFQSERLALAVMANMTAQLALEESLRWAREREAFGKPIGKFQVLRHRLAEMATQLEVSREFTYRQAAKMAAGKSVIKEISMAKNFATDVADRLTYDAVQVLGGMGYMRESLVERLYRDNRILSIGGGSREIMNEIIGKQMGL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UCC_B_6(4Y9J)
?
[Raw transfer]



FAD_B_7(2PG0)
?
[Raw transfer]



FDA_A_20(3OIB)
?
[Raw transfer]



FAD_A_5(2PG0)
?
[Raw transfer]



FAO_A_4(3P4T)
?
[Raw transfer]



FAD_A_5(2PG0)
?
[Raw transfer]



FAO_B_5(3P4T)
?
[Raw transfer]



FDA_A_20(3OIB)
?
[Raw transfer]



FAD_A_3(2Z1Q)
?
[Raw transfer]



FAD_A_3(3NF4)
?
[Raw transfer]



FDA_B_4(4IV6)
?
[Raw transfer]



FDA_A_3(4IV6)
?
[Raw transfer]



FAO_B_5(3P4T)
?
[Raw transfer]



FAO_B_5(3P4T)
?
[Raw transfer]
3 PsiBlast_PDB 90.4149% -88 - C1 -3P4T 7.4 ?
25 PsiBlast_CBE 90.3749% -89 - C1 -3OIB 4.2 ?
24 PsiBlast_CBE 90.3449% -90 - C1 -3P4T 7.2 ?
115 HHSearch 89.6351% -94 - C1 -3R7K - ? -
2 PsiBlast_PDB 89.5449% -87 - C1 -3OIB 7.6 ?
26 PsiBlast_CBE 89.1541% -94 - C1 -2PG0 7.6 ?
125 HHSearch 85.7347% -85 - C1 -3P4T 4.4 ?
4 PsiBlast_PDB 85.7341% -92 - C1 -2PG0 8.1 ?
1 PsiBlast_PDB 85.4553% -87 - C1 -3R7K - ? -
21 PsiBlast_CBE 84.8853% -83 - C1 -3R7K - ? -
23 PsiBlast_CBE 84.2053% -84 - C1 -3R7K - ? -
111 HHSearch 82.5641% -93 - C1 -2PG0 8.1 ?
22 PsiBlast_CBE 82.4453% -82 - C1 -3R7K - ? -
129 HHSearch 80.2434% -92 - C1 -3OWA - ? -
122 HHSearch 79.9135% -80 - C1 -1UKW - ? -
76 PsiBlast_CBE 78.6036% -88 - C1 -2Z1Q - ? -
110 HHSearch 78.3332% -88 - C1 -1RX0 - ACAD8_HUMAN -
53 PsiBlast_CBE 77.5434% -86 - C1 -1BUC - ACDS_MEGEL -
13 PsiBlast_PDB 77.5335% -75 - C1 -1UKW - ? -
82 PsiBlast_CBE 77.4834% -84 - C1 -1RX0 - ACAD8_HUMAN -
28 PsiBlast_CBE 76.7637% -81 - C1 -4IV6 5.3 ?
6 PsiBlast_PDB 76.4637% -81 - C1 -4IV6 4.6 ?
102 Fugue 73.6535% -79 - C1 -2Z1Q 6.8 ?
89 PsiBlast_CBE 65.7135% -83 - C1 -3NF4 5.9 ?