@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1538: (2016-01-30 )
MYTPANNHNRSLAMSTQPTPAAARHCKVAIIGTGFSGLGMAIRLRQEGEDDFLIFEKDAGVGGTWRVNNYPGCACDVQSHVYSFSFEANPEWTRMFARQPEIRAYLEKCWEKYRLQEKTLLNTEIGKLAWDERQSLWHLHDAQGNHYTANAVVSGMGGLSTPAYPRLDGLENFQGKVFHSQQWDHDYDLKGKRVAVIGTGASAIQFVPEIQPLVAALDLYQRTPPWILPKPDRAISETERRRFRRFPLVQKLWRGGLYSLLEGRVLGFTFAPQVMKLVQRLAIRHIHKQIKDPELRRKVTPDYTIGCKRILMSHNYYPALAAANSTVITEGIRAVTANGIVDGNGREREVDAIIFGTGFTANDPIPRGVVFGRDGRDLLDSWSKGPEAYKGTTTAGFPNLFFLMGPNTGLGHNSMVYMIESQIAYVLDALKLMKRRELLSLEVKAPVQERYNEYLQRKLDRSVWSVGGCKSWYLHPVSGRNCTLWPGFTWRFRALTRQFDASAYHLTTTPLAALSNEARQQAEGVPA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_3(2YLT)
PAMO_THEFY
[Raw transfer]



N01_A_3(4C74)
PAMO_THEFY
[Raw transfer]
13 PsiBlast_PDB 91.7327% -86 - C1 -4RG3 - ? -
14 PsiBlast_PDB 91.3827% -91 - C1 -4RG4 - ? -
124 Fugue 90.1629% -94 - C1 -1W4X - PAMO_THEFY -
2 PsiBlast_PDB 89.7030% -84 - C1 -2YLR - PAMO_THEFY -
3 PsiBlast_PDB 89.5630% -83 - C1 -2YLS - PAMO_THEFY -
6 PsiBlast_PDB 89.4630% -82 - C1 -4OVI - PAMO_THEFY -
16 PsiBlast_PDB 89.1430% -81 - C1 -4D04 - PAMO_THEFY -
1 PsiBlast_PDB 89.0330% -85 - C1 -1W4X - PAMO_THEFY -
5 PsiBlast_PDB 88.9430% -83 - C1 -4C74 10.4 PAMO_THEFY
15 PsiBlast_PDB 88.6830% -84 - C1 -4D03 - PAMO_THEFY -
7 PsiBlast_PDB 88.6630% -82 - C1 -2YLW - PAMO_THEFY -
12 PsiBlast_PDB 88.5730% -85 - C1 -2YLZ - PAMO_THEFY -
101 HHSearch 88.4329% -89 * C1 *1W4X - PAMO_THEFY -
102 HHSearch 88.2028% -90 - C1 -3UOX - OTEMO_PSEPU -
11 PsiBlast_PDB 88.1430% -82 - C1 -2YLX - PAMO_THEFY -
10 PsiBlast_PDB 87.8630% -81 - C1 -4C77 - PAMO_THEFY -
8 PsiBlast_PDB 87.8230% -82 - C1 -2YM1 - PAMO_THEFY -
9 PsiBlast_PDB 86.9530% -80 - C1 -2YM2 - PAMO_THEFY -
4 PsiBlast_PDB 86.5930% -82 - C1 -2YLT 10.1 PAMO_THEFY
20 PsiBlast_PDB 84.1129% -89 - C1 -4AOX - ? -