@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1587: (2016-01-30 )
MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLTDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLGVHVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGHAIHIANRKKR

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_B_5(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_C_3(1BHY)
?
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




3II_B_6(3II4)
DLDH_MYCTU
[Raw transfer]




21 PsiBlast_CBE 97.5599%-110 - C2 -1LPF 12.7 DLDH_PSEFL
1 PsiBlast_PDB 97.0299%-111 - C2 -1LPF - DLDH_PSEFL -
94 HHSearch 94.4884%-113 - C2 -3LAD 12.6 DLDH_AZOVI
2 PsiBlast_PDB 94.4884%-113 - C2 -3LAD - DLDH_AZOVI -
22 PsiBlast_CBE 93.8784%-110 - C2 -3LAD 12.8 DLDH_AZOVI
10 PsiBlast_PDB 83.8350%-103 - C2 -3URH 12.6 ?
97 HHSearch 82.1150%-100 - C2 -3URH 12.9 ?
15 PsiBlast_PDB 81.6044%-104 - C2 -1EBD 12.8 DLDH1_GEOSE
31 PsiBlast_CBE 81.4250%-106 - C2 -1ZY8 - DLDH_HUMAN -
108 HHSearch 81.3751%-101 - C2 -2YQU 13.2 ?
62 PsiBlast_CBE 81.1944% -95 - C2 -1V59 13.2 DLDH_YEAST
14 PsiBlast_PDB 80.9544% -98 - C2 -1V59 13.1 DLDH_YEAST
64 PsiBlast_CBE 80.6844%-102 - C2 -1EBD 12.4 DLDH1_GEOSE
98 HHSearch 80.6550%-105 - C2 -1ZMD - DLDH_HUMAN -
29 PsiBlast_CBE 80.5650%-103 - C2 -1ZY8 - DLDH_HUMAN -
102 HHSearch 80.4645%-100 - C2 -1V59 13.0 DLDH_YEAST
9 PsiBlast_PDB 80.4450% -99 - C2 -2YQU 13.2 ?
63 PsiBlast_CBE 80.4344% -97 - C2 -1JEH 13.3 DLDH_YEAST
111 HHSearch 80.4144%-104 - C2 -1EBD 12.6 DLDH1_GEOSE
6 PsiBlast_PDB 80.3050%-105 - C2 -1ZMD - DLDH_HUMAN -
96 HHSearch 80.2549%-104 * C2 *2QAE 13.0 DLDH_TRYCR
56 PsiBlast_CBE 79.8950% -99 - C2 -2YQU 13.1 ?
13 PsiBlast_PDB 79.3244% -96 - C2 -1JEH 13.2 DLDH_YEAST
19 PsiBlast_PDB 77.9742%-101 - C2 -4JDR 13.0 DLDH_ECOLI
57 PsiBlast_CBE 77.6550% -99 - C2 -2EQ7 13.5 ?
81 PsiBlast_CBE 77.2842%-101 - C2 -4JDR 13.0 DLDH_ECOLI
75 PsiBlast_CBE 77.0745%-101 - C2 -2EQ6 13.3 ?
8 PsiBlast_PDB 77.0250% -98 - C2 -2EQ7 13.4 ?
101 HHSearch 76.3846%-101 - C2 -2EQ6 13.4 ?
16 PsiBlast_PDB 76.1945%-100 - C2 -2EQ6 13.3 ?
90 PsiBlast_CBE 75.3337% -96 - C2 -3II4 10.7 DLDH_MYCTU
12 PsiBlast_PDB 75.1647%-102 - C2 -2QAE 11.8 DLDH_TRYCR
61 PsiBlast_CBE 75.1447%-102 - C2 -2QAE 11.8 DLDH_TRYCR
95 HHSearch 74.9141%-101 - C2 -1LVL 12.1 DLDH1_PSEPU
89 PsiBlast_CBE 74.3937% -99 - C2 -3II4 12.2 DLDH_MYCTU
99 HHSearch 74.3241% -96 - C2 -1OJT 10.5 ?
83 PsiBlast_CBE 70.2938% -93 - C2 -1OJT 9.3 ?
84 PsiBlast_CBE 69.5738% -91 - C2 -1BHY 9.4 ?
82 PsiBlast_CBE 69.1339% -97 - C2 -1LVL 11.2 DLDH1_PSEPU