@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1589: (2016-01-30 )
MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAVEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCDELGVRLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAFIKANVTKPVVSYIAGVTAPPGKRMGHAGAIISGGKGTADEKFAALQDAGVKTVRSLADIGKALAELTGWEVKKA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_A_9(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_A_12(2NUA)
SUCD_ECOLI
[Raw transfer]




COA_D_10(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_A_11(2NU8)
SUCD_ECOLI
[Raw transfer]




COA_A_11(2NU7)
SUCD_ECOLI
[Raw transfer]




COA_A_3(4XX0)
?
[Raw transfer]




COA_W_23(1JLL)
SUCD_ECOLI
[Raw transfer]




COA_D_10(1CQI)
SUCD_ECOLI
[Raw transfer]




COA_G_7(2SCU)
SUCD_ECOLI
[Raw transfer]




COA_G_7(2SCU)
SUCD_ECOLI
[Raw transfer]




4 PsiBlast_PDB 97.5588%-110 - C4 -1CQJ 7.8 SUCD_ECOLI
24 PsiBlast_CBE 97.4988%-110 - C4 -1CQJ 8.1 SUCD_ECOLI
6 PsiBlast_PDB 97.3488%-111 - C4 -2NU8 8.6 SUCD_ECOLI
27 PsiBlast_CBE 96.7488%-110 - C4 -2NU8 - SUCD_ECOLI -
28 PsiBlast_CBE 96.5988%-114 - C4 -2NUA - SUCD_ECOLI -
7 PsiBlast_PDB 96.5988%-114 - C4 -2NUA 7.9 SUCD_ECOLI
5 PsiBlast_PDB 96.4388%-110 - C4 -2NU7 8.7 SUCD_ECOLI
1 PsiBlast_PDB 96.4288%-108 - C4 -1JKJ - SUCD_ECOLI -
26 PsiBlast_CBE 96.3488%-110 - C4 -2NU7 - SUCD_ECOLI -
23 PsiBlast_CBE 96.1788%-107 - C4 -1JKJ - SUCD_ECOLI -
2 PsiBlast_PDB 95.8488%-107 - C4 -1JLL - SUCD_ECOLI -
22 PsiBlast_CBE 95.7988%-106 - C4 -1JLL 7.7 SUCD_ECOLI
25 PsiBlast_CBE 95.7688%-110 - C4 -1CQI 7.2 SUCD_ECOLI
3 PsiBlast_PDB 95.4788%-108 - C4 -1CQI - SUCD_ECOLI -
21 PsiBlast_CBE 95.3688%-112 - C4 -1SCU - SUCD_ECOLI -
9 PsiBlast_PDB 90.5066%-105 - C4 -1EUC - SUCA_PIG -
10 PsiBlast_PDB 90.1566%-105 - C4 -4XX0 8.7 ?
8 PsiBlast_PDB 90.0466%-104 - C4 -2FPG - SUCA_PIG -
12 PsiBlast_PDB 85.9356%-109 - C4 -3UFX - SUCD_THETH -
34 HHSearch 85.8256%-114 - C4 -1OI7 - SUCD_THETH -
51 Fugue 58.6486%-125 * C4 *2SCU 7.9 SUCD_ECOLI
54 Fugue 58.4585%-124 - C4 -2SCU 7.9 SUCD_ECOLI