@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1649: (2016-01-31 )
MSKLLSGQVALVTGGAAGIGRATALAFAAAGVKVVVADLDSAGGEGTVEAIRQAGGEALFIRCDVTRDAEVKALVEGCAAAYGRLDYAFNNAGIEIEQGKLADGNEAEFDAIMAVNVKGVWLCMKHQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPLGRVGRVEEIAAAVLYLCCDNAGFTTGIALPVDGGATAI

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]



NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]



NAD_C_9(2CFC)
HCDR_XANP2
[Raw transfer]



NAI_G_7(2DTE)
?
[Raw transfer]



NAD_B_7(2CFC)
HCDR_XANP2
[Raw transfer]



NAI_A_5(4NBU)
?
[Raw transfer]



NAI_B_6(4NBU)
?
[Raw transfer]



NAI_C_8(4NBU)
?
[Raw transfer]



NAI_D_9(4NBU)
?
[Raw transfer]



NAD_D_11(2CFC)
HCDR_XANP2
[Raw transfer]



NAD_A_5(3WDS)
?
[Raw transfer]



NAI_E_5(2DTE)
?
[Raw transfer]



NAD_D_11(4GH5)
?
[Raw transfer]



NAI_C_9(4ITU)
?
[Raw transfer]



NAI_B_7(4ITU)
?
[Raw transfer]



NAD_C_9(4GH5)
?
[Raw transfer]



NAD_A_5(4GH5)
?
[Raw transfer]



NAD_B_7(4GH5)
?
[Raw transfer]



NAI_D_11(4ITU)
?
[Raw transfer]



NAI_A_5(4ITU)
?
[Raw transfer]



NAD_D_18(4WEC)
?
[Raw transfer]



NAD_C_15(4WEC)
?
[Raw transfer]



NAD_B_10(4WEC)
?
[Raw transfer]



NAD_A_5(4WEC)
?
[Raw transfer]



1PS_B_6(4URE)
?
[Raw transfer]



THJ_A_4(3GED)
?
[Raw transfer]
24 PsiBlast_CBE 91.1639%-111 - C1 -1IY8 - LVR_LEIAQ -
22 PsiBlast_CBE 90.7139%-111 - C1 -1IY8 - LVR_LEIAQ -
46 PsiBlast_CBE 90.2040%-111 - C1 -2CFC 7.2 HCDR_XANP2
45 PsiBlast_CBE 90.1440%-111 - C1 -2CFC 8.9 HCDR_XANP2
25 PsiBlast_CBE 90.0039%-112 - C1 -1IY8 - LVR_LEIAQ -
44 PsiBlast_CBE 89.9240%-112 - C1 -2CFC 8.9 HCDR_XANP2
1 PsiBlast_PDB 89.5839%-109 - C1 -1IY8 - LVR_LEIAQ -
16 PsiBlast_PDB 89.5040%-111 - C1 -2CFC 7.0 HCDR_XANP2
26 PsiBlast_CBE 89.1739%-110 - C1 -1IY8 - LVR_LEIAQ -
21 PsiBlast_CBE 89.0639%-110 - C1 -1IY8 - LVR_LEIAQ -
27 PsiBlast_CBE 89.0239%-111 - C1 -1IY8 - LVR_LEIAQ -
40 PsiBlast_CBE 88.8242%-118 - C1 -4NBW - ? -
112 HHSearch 88.8139%-110 - C1 -2CFC 6.9 HCDR_XANP2
23 PsiBlast_CBE 88.7839%-109 - C1 -1IY8 - LVR_LEIAQ -
38 PsiBlast_CBE 87.3942%-112 - C1 -4NBW - ? -
39 PsiBlast_CBE 87.3642%-112 - C1 -4NBW - ? -
4 PsiBlast_PDB 87.1643%-124 - C1 -4NI5 - ? -
64 PsiBlast_CBE 86.5340%-106 - C1 -3TOX - ? -
63 PsiBlast_CBE 86.4640%-104 - C1 -3TOX - ? -
131 HHSearch 85.7937%-109 - C1 -3WDS 12.0 ?
29 PsiBlast_CBE 85.1242%-112 - C1 -4URE 3.8 ?
31 PsiBlast_CBE 84.6837%-119 - C1 -4WEC 6.9 ?
5 PsiBlast_PDB 84.2237%-118 - C1 -4WEC 6.1 ?
32 PsiBlast_CBE 84.0137%-117 - C1 -4WEC 7.4 ?
37 PsiBlast_CBE 83.9940%-111 - C1 -4NBU 9.0 ?
36 PsiBlast_CBE 83.9640%-108 - C1 -4NBU 9.6 ?
30 PsiBlast_CBE 83.9037%-119 - C1 -4WEC 9.4 ?
13 PsiBlast_PDB 83.0939%-109 - C1 -2DTE 9.8 ?
35 PsiBlast_CBE 82.3240%-109 - C1 -4NBU 9.8 ?
9 PsiBlast_PDB 82.3140%-111 - C1 -4NBU 11.4 ?
42 PsiBlast_CBE 81.8939%-112 - C1 -2DTE 10.6 ?
88 PsiBlast_CBE 71.5340% -93 - C1 -4ITU 9.5 ?
87 PsiBlast_CBE 70.5640% -95 - C1 -4ITU 9.7 ?
90 PsiBlast_CBE 69.4840% -95 - C1 -4GH5 9.8 ?
92 PsiBlast_CBE 68.6740% -94 - C1 -4GH5 9.8 ?
86 PsiBlast_CBE 68.3440% -94 - C1 -4ITU 9.6 ?
85 PsiBlast_CBE 68.3340% -94 - C1 -4ITU 9.8 ?
91 PsiBlast_CBE 68.2140% -95 - C1 -4GH5 10.0 ?
89 PsiBlast_CBE 67.9640% -94 - C1 -4GH5 10.1 ?