@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1737: (2016-02-01 )
MTDAIRYEKGQDNVVVLTMDMPGQSANTMNGVYREAMAKTIARLEAEKEGIAGVVLTSAKKTFFAGGDLNELIKVTKADAPAFYQGILELKGQLRRLETLGKPVVAAINGAALGGGWEICLACHHRIALDNPGVQLGLPEVTLGLLPGGGGIVRMVRLLGLEKALPYLAEGKKVRPAEALKAGLIHELADSPEEMLEKARAWILANPAAKQPWDSAGYKIPGGTPASPNVAQMLAIAPSVLRDKTKGCFPAPEKIMCAAVEGAQVDFDTAQLIEARYFTELTTGQVAKNMIGTFWFQLNEINAGKSRPQGYPVRATKKVGVLGAGMMGAGIAYVSAAAGIEVVLKDVSLEAAEKGKAYSARLLDKKVARGHLSAEKRDAFLARIVPSVSEADFEGCDLIIEAVFEDRALKGKVTAEAEKHALADAVVASNTSTLPITGLAQAVARPEKFIGLHFFSPVDKMPLVEIIRGEKTSDETLARGFDYVLQIKKTPIVVNDSRGFFTSRVFGTFTNEGIAMLGEGVSAAMIDNQARQAGMPVGPLAISDEVSLSLMTHIRNQTARDLEAEGKALPTHPAFAVIDLMVNEYKRPGKAAGAGFYDYPANGRKHLWAELKSRFEKPDAQISAEDVRDRLLFIQAIETVRCVEEGVLHSTADANIGSIFGIGFAAWSGGALQFINQYGLKDFIARAQYLVEQYGERFEPPALLLEKAAKGELF

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]



NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]



NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]



NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]



NAD_D_4(1LSO)
HCDH_HUMAN
[Raw transfer]



NAD_C_7(4KUG)
?
[Raw transfer]



NAD_D_8(4KUG)
?
[Raw transfer]



NAD_B_6(4KUG)
?
[Raw transfer]



NAD_A_5(4KUG)
?
[Raw transfer]



CAA_D_4(1F0Y)
HCDH_HUMAN
[Raw transfer]



CAA_D_4(1M75)
HCDH_HUMAN
[Raw transfer]



CAA_C_3(1M75)
HCDH_HUMAN
[Raw transfer]
3 PsiBlast_PDB 99.1657% -91 - C1 -4B3J - ? -
1 PsiBlast_PDB 99.0457% -92 - C1 -4B3H - ? -
2 PsiBlast_PDB 98.9957% -92 - C1 -4B3I - ? -
21 PsiBlast_CBE 98.7157% -91 - C1 -4B3J - ? -
23 PsiBlast_CBE 98.5357% -90 - C1 -4B3H - ? -
22 PsiBlast_CBE 97.7757% -90 - C1 -4B3I - ? -
27 PsiBlast_CBE 82.2734% -86 - C1 -1WDK - FADB_PSEFR -
106 Fugue 81.5633% -82 - C1 -1WDK - FADB_PSEFR -
5 PsiBlast_PDB 80.7434% -84 - C1 -1WDM - FADB_PSEFR -
25 PsiBlast_CBE 80.7034% -85 - C1 -1WDM - FADB_PSEFR -
24 PsiBlast_CBE 80.6934% -87 - C1 -2D3T - FADB_PSEFR -
26 PsiBlast_CBE 79.3234% -83 * C1 *1WDL - FADB_PSEFR -
4 PsiBlast_PDB 78.2834% -81 - C1 -1WDL - FADB_PSEFR -
115 HHSearch 74.5230% -83 - C1 -2WTB - MFP2_ARATH -
6 PsiBlast_PDB 72.5730% -77 - C1 -2WTB - MFP2_ARATH -
11 PsiBlast_PDB 69.8428% -81 - C1 -2X58 - ECHP_RAT -
12 PsiBlast_PDB 69.7228% -81 - C1 -3ZWB - ECHP_RAT -
7 PsiBlast_PDB 69.6528% -79 - C1 -3ZW8 - ECHP_RAT -
9 PsiBlast_PDB 69.3928% -79 - C1 -3ZWA - ECHP_RAT -
10 PsiBlast_PDB 69.3728% -80 - C1 -3ZWC - ECHP_RAT -
54 PsiBlast_CBE 38.8034% -67 - C1 -1M75 5.3 HCDH_HUMAN
74 PsiBlast_CBE 38.5135% -65 - C1 -1F17 9.6 HCDH_HUMAN
55 PsiBlast_CBE 37.8534% -68 - C1 -1M75 5.1 HCDH_HUMAN
60 PsiBlast_CBE 37.5833% -66 - C1 -1F0Y 5.6 HCDH_HUMAN
73 PsiBlast_CBE 37.3035% -65 - C1 -1F17 9.1 HCDH_HUMAN
57 PsiBlast_CBE 36.2033% -71 - C1 -3HDH 9.1 HCDH_PIG
69 PsiBlast_CBE 35.2033% -68 - C1 -1LSO 9.5 HCDH_HUMAN
16 PsiBlast_PDB 34.9735% -57 - C1 -4KUG 9.0 ?
56 PsiBlast_CBE 34.0833% -66 - C1 -3HDH 9.5 HCDH_PIG
45 PsiBlast_CBE 32.8435% -54 - C1 -4KUG 8.6 ?
46 PsiBlast_CBE 31.8335% -54 - C1 -4KUG 8.6 ?
44 PsiBlast_CBE 30.7535% -54 - C1 -4KUG 8.8 ?