@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1794: (2016-02-01 )
MSKPETTAAPNFLRQIVQADLDAGKHAKIVTRFPPEPNGYLHIGHAKSICLNFGLAQEFAGDCHLRFDDTNPAKEDQEYIDAIEADIKWLGFQWSGEVCYASNYFDQLHAWAVELIKAGKAFVCDLGPEEMREYRGTLTEPGRNSPYRDRSVEENLDLFARMKAGEFPDGARSLRAKIDMGSPNMNLRDPILYRIRHAHHHQTGDKWCIYPSYDFTHGQSDAIEGITHSICTLEFEDHRPLYEWFLANLPVPAQPRQYEFSRLNLNYTVTSKRKLKQLVDEGHVSGWDDPRMSTLSGYRRRGYTPESIRNFCEMIGVNRASGVVDIGMLEFSIRDHLDATAPRAMCVLKPLKVVITNYPEGQVENLELPRHPKEDMGVRVLPFGRELFIDAGDFEEVPPAGYKRLIPGGEVRLRGSYVIRADEAIKDADGNIVELRCSYDPDTLGKNPEGRKVKGVIHWVPAEGSVECEVRLYDRLFRSANPEKAEEGGSFLDNINADSLQVLAGCRAEPSLGQANPEDRFQFEREGYFVADLKDSRPGKPVFNRTVTLRDSWGQG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GSU_A_5(2RE8)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JXX)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JXZ)
SYQ_ECOLI
[Raw transfer]



QSI_C_3(1EUY)
SYQ_ECOLI
[Raw transfer]



QSI_A_5(2RD2)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JYZ)
SYQ_ECOLI
[Raw transfer]



QSI_C_3(1EUQ)
SYQ_ECOLI
[Raw transfer]



QSI_G_7(1QTQ)
SYQ_ECOLI
[Raw transfer]



AMP_F_6(1O0C)
SYQ_ECOLI
[Raw transfer]



A_F_6(1EXD)
SYQ_ECOLI
[Raw transfer]



AMP_F_6(1O0B)
SYQ_ECOLI
[Raw transfer]
1 PsiBlast_PDB 98.96100% -91 - C2 -5BNZ - SYQ_PSEAE -
21 PsiBlast_CBE 98.77100% -91 - C2 -5BNZ - SYQ_PSEAE -
5 PsiBlast_PDB 85.8960% -89 - C2 -1QTQ - SYQ_ECOLI -
16 PsiBlast_PDB 85.8660% -87 - C2 -2RE8 7.9 SYQ_ECOLI
4 PsiBlast_PDB 85.8560% -89 - C2 -1GTS - SYQ_ECOLI -
6 PsiBlast_PDB 85.5860% -85 - C2 -1ZJW - SYQ_ECOLI -
15 PsiBlast_PDB 85.4760% -86 - C2 -2RD2 8.2 SYQ_ECOLI
3 PsiBlast_PDB 85.2360% -88 - C2 -1GTR - SYQ_ECOLI -
11 PsiBlast_PDB 85.0960% -88 - C2 -1O0C 6.2 SYQ_ECOLI
10 PsiBlast_PDB 84.9860% -87 - C2 -1O0B 5.0 SYQ_ECOLI
37 HHSearch 84.9160% -88 - C2 -1QTQ 8.6 SYQ_ECOLI
7 PsiBlast_PDB 84.9060% -85 - C2 -4JXX 6.7 SYQ_ECOLI
13 PsiBlast_PDB 84.8960% -87 - C2 -1EUY 7.9 SYQ_ECOLI
9 PsiBlast_PDB 84.5260% -85 - C2 -4JYZ 7.4 SYQ_ECOLI
14 PsiBlast_PDB 84.1860% -87 - C2 -1EXD 6.2 SYQ_ECOLI
12 PsiBlast_PDB 83.9960% -87 - C2 -1EUQ 6.2 SYQ_ECOLI
8 PsiBlast_PDB 83.8360% -84 - C2 -4JXZ 6.6 SYQ_ECOLI
17 PsiBlast_PDB 81.8547% -90 - C2 -2HZ7 - SYQ_DEIRA -
38 HHSearch 80.8151% -85 - C2 -2HZ7 - SYQ_DEIRA -
18 PsiBlast_PDB 73.5247% -81 - C2 -4R3Z - SYQ_HUMAN -