@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1899: (2016-02-02 )
MREYQRLKGFTDNLELRRRNRATVEHYMRMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPQGYCENHYIHSFELENGRIKRNREFMNPMQKLRALGIAVPQIKRDGIPT

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AOD_A_3(3JUM)
?
[Raw transfer]




GOL_A_6(3FF0)
PHZB2_PSEAE
[Raw transfer]




3B4_B_5(3B4P)
?
[Raw transfer]




AKD_B_4(3JUP)
?
[Raw transfer]




AOD_B_4(3JUM)
?
[Raw transfer]




GOL_A_7(3FF0)
PHZB2_PSEAE
[Raw transfer]




GOL_A_7(3FF0)
PHZB2_PSEAE
[Raw transfer]




3B4_A_3(3B4P)
?
[Raw transfer]




AKD_A_3(3JUP)
?
[Raw transfer]




AKD_B_6(3JUQ)
?
[Raw transfer]




AOD_A_3(3JUM)
?
[Raw transfer]




HHA_B_7(3CNM)
?
[Raw transfer]




AJD_A_3(3JUQ)
?
[Raw transfer]




HHA_A_6(3CNM)
?
[Raw transfer]




AJD_A_3(3JUO)
?
[Raw transfer]




3OC_A_3(3DZL)
?
[Raw transfer]




AKD_B_6(3JUN)
?
[Raw transfer]




3OC_B_6(3DZL)
?
[Raw transfer]




3OC_A_4(3DZL)
?
[Raw transfer]




AKD_A_4(3JUN)
?
[Raw transfer]




29 HHSearch 94.8065% -81 - C3 -3FF0 3.6 PHZB2_PSEAE
1 PsiBlast_PDB 93.9465% -77 - C3 -3FF0 3.6 PHZB2_PSEAE
18 PsiBlast_CBE 88.0950% -74 - C3 -3JUP 3.6 ?
23 PsiBlast_CBE 87.8850% -76 * C3 *3CNM 3.7 ?
21 PsiBlast_CBE 87.3350% -74 - C3 -3JUM 4.7 ?
5 PsiBlast_PDB 87.1050% -75 - C3 -3DZL 3.7 ?
25 PsiBlast_CBE 87.0150% -71 - C3 -3B4O - ? -
24 PsiBlast_CBE 86.7150% -73 - C3 -3B4P 5.0 ?
22 PsiBlast_CBE 86.6350% -74 - C3 -3DZL 2.3 ?
7 PsiBlast_PDB 86.6250% -78 - C3 -3JUM 5.1 ?
4 PsiBlast_PDB 86.4250% -76 - C3 -3CNM 3.9 ?
2 PsiBlast_PDB 86.1850% -76 - C3 -3B4O - ? -
19 PsiBlast_CBE 85.9550% -73 - C3 -3JUO - ? -
17 PsiBlast_CBE 85.6150% -74 - C3 -3JUQ 4.3 ?
11 PsiBlast_PDB 85.5150% -75 - C3 -3JUQ 3.0 ?
9 PsiBlast_PDB 85.3750% -76 - C3 -3JUO 4.2 ?
10 PsiBlast_PDB 85.3450% -75 - C3 -3JUP 4.0 ?
30 HHSearch 84.8452% -78 - C3 -3JUM 4.1 ?
3 PsiBlast_PDB 84.8350% -78 - C3 -3B4P 5.1 ?
20 PsiBlast_CBE 83.7950% -72 - C3 -3JUN 3.0 ?
8 PsiBlast_PDB 83.6750% -74 - C3 -3JUN 3.1 ?