@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1982: (2016-02-03 )
MTTRTSPAPAGLLRPSLHCLAFAVALGSAGAALAKDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSWDNRTASR

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PQQ_B_8(1FLG)
EXAA_PSEAE
[Raw transfer]



PQQ_A_7(1FLG)
EXAA_PSEAE
[Raw transfer]



PQQ_A_7(1FLG)
EXAA_PSEAE
[Raw transfer]



PQQ_A_7(1FLG)
EXAA_PSEAE
[Raw transfer]



PQQ_A_7(2AD6)
DHM1_METME
[Raw transfer]



PQQ_A_7(2AD8)
DHM1_METME
[Raw transfer]



PQQ_A_7(1G72)
DHM1_METME
[Raw transfer]



PQQ_A_7(4AAH)
DHM1_METME
[Raw transfer]



PQQ_C_8(4AAH)
DHM1_METME
[Raw transfer]



PQQ_A_3(1KV9)
QHED_PSEPU
[Raw transfer]
1 PsiBlast_PDB 96.69100% -64 - C2 -1FLG 7.1 EXAA_PSEAE
21 PsiBlast_CBE 95.73100% -65 - C2 -1FLG 7.4 EXAA_PSEAE
66 Fugue 95.5798% -65 - C2 -1FLG 7.1 EXAA_PSEAE
46 HHSearch 94.1396% -62 - C2 -1FLG 6.2 EXAA_PSEAE
8 PsiBlast_PDB 73.2635% -46 - C2 -1H4J - DHM1_METEA -
23 PsiBlast_CBE 73.1035% -50 - C2 -1H4I - DHM1_METEA -
7 PsiBlast_PDB 72.8635% -47 - C2 -1W6S - DHM1_METEA -
34 PsiBlast_CBE 72.8335% -46 - C2 -1H4J - DHM1_METEA -
33 PsiBlast_CBE 72.8335% -47 - C2 -1H4J - DHM1_METEA -
32 PsiBlast_CBE 72.7935% -46 - C2 -1H4J - DHM1_METEA -
31 PsiBlast_CBE 72.7635% -50 - C2 -1W6S - DHM1_METEA -
24 PsiBlast_CBE 72.6334% -50 - C2 -4TQO - ? -
37 PsiBlast_CBE 72.5134% -45 - C2 -2D0V - ? -
45 HHSearch 72.4535% -46 - C2 -1W6S - DHM1_METEA -
27 PsiBlast_CBE 72.2834% -51 - C2 -4TQO - ? -
5 PsiBlast_PDB 72.2235% -48 - C2 -1H4I - DHM1_METEA -
48 HHSearch 72.1433% -44 * C2 *2AD6 7.9 DHM1_METME
10 PsiBlast_PDB 72.0434% -47 - C2 -2D0V - ? -
36 PsiBlast_CBE 71.8334% -47 - C2 -2D0V - ? -
40 PsiBlast_CBE 71.7832% -46 - C2 -2AD8 - DHM1_METME -
12 PsiBlast_PDB 71.0332% -46 - C2 -4AAH 7.5 DHM1_METME
15 PsiBlast_PDB 70.9132% -47 - C2 -2AD8 7.3 DHM1_METME
39 PsiBlast_CBE 70.8832% -46 - C2 -4AAH 6.7 DHM1_METME
50 HHSearch 70.1538% -45 - C2 -1KV9 6.9 QHED_PSEPU
67 Fugue 69.9832% -46 - C2 -1G72 7.7 DHM1_METME