@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2012: (2016-02-03 )
MNPDYRSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFAAAELDTGFIARHQDDLLPAPQALPEHFWQAAAEAWLQSEPGHRRDDDPHSPWSRNDGWRSALARESDLMLRCRDERRCVRLRHASPSQYRLDGDDLVSRVDGVTRRSAALRRGRQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDENQA

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_7(3G8C)
ACCC_ECOLI
[Raw transfer]




ATP_A_3(1DV2)
ACCC_ECOLI
[Raw transfer]




ADP_A_8(3OUZ)
?
[Raw transfer]




ATP_B_4(1DV2)
ACCC_ECOLI
[Raw transfer]




ADP_A_2(3RV4)
ACCC_ECOLI
[Raw transfer]




ADP_A_4(3RV3)
ACCC_ECOLI
[Raw transfer]




ADP_A_4(3RUP)
ACCC_ECOLI
[Raw transfer]




ANP_A_5(2J9G)
ACCC_ECOLI
[Raw transfer]




ATF_A_4(2VR1)
ACCC_ECOLI
[Raw transfer]




AP2_A_2(2VQD)
ACCC_PSEAE
[Raw transfer]




ANP_A_3(2VPQ)
?
[Raw transfer]




ANP_A_3(2VPQ)
?
[Raw transfer]




ANP_B_7(2VPQ)
?
[Raw transfer]




ADP_B_4(3G8D)
ACCC_ECOLI
[Raw transfer]




ADP_B_8(2J9G)
ACCC_ECOLI
[Raw transfer]




LZK_A_3(2V59)
ACCC_ECOLI
[Raw transfer]




LZL_A_3(2V5A)
ACCC_ECOLI
[Raw transfer]




LZK_B_4(2V59)
ACCC_ECOLI
[Raw transfer]




L23_A_4(2W71)
ACCC_ECOLI
[Raw transfer]




OA4_A_3(2W6P)
ACCC_ECOLI
[Raw transfer]




L22_A_3(2W70)
ACCC_ECOLI
[Raw transfer]




OA2_A_3(2W6N)
ACCC_ECOLI
[Raw transfer]




JZL_B_4(3JZI)
ACCC_ECOLI
[Raw transfer]




L22_B_5(2W70)
ACCC_ECOLI
[Raw transfer]




GOL_A_5(3VA7)
?
[Raw transfer]




LZJ_B_5(2V58)
ACCC_ECOLI
[Raw transfer]




OA2_B_5(2W6N)
ACCC_ECOLI
[Raw transfer]




JZK_B_4(3JZF)
ACCC_ECOLI
[Raw transfer]




L23_C_6(2W71)
ACCC_ECOLI
[Raw transfer]




LZJ_A_3(2V58)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(4RZQ)
ACCC_HAEIN
[Raw transfer]




ADP_B_9(3RUP)
ACCC_ECOLI
[Raw transfer]




ADP_B_7(3RV3)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(3RV3)
ACCC_ECOLI
[Raw transfer]




BTN_A_5(3G8C)
ACCC_ECOLI
[Raw transfer]




1 PsiBlast_PDB 94.07100%-102 - C3 -3U9S - ? -
2 PsiBlast_PDB 89.83100% -94 - C3 -3U9T - ? -
112 Fugue 89.5199% -94 - C3 -3U9T - ? -
122 HHSearch 87.5398% -88 - C3 -3U9T - ? -
114 Fugue 73.7336% -66 - C3 -3VA7 2.1 ?
39 PsiBlast_CBE 71.6352% -88 - C3 -2W6O - ACCC_ECOLI -
123 HHSearch 71.3844% -86 - C3 -3N6R - ? -
29 PsiBlast_CBE 71.2352% -94 - C3 -4HR7 - ACCC_ECOLI -
32 PsiBlast_CBE 71.0752% -89 - C3 -4HR7 - ACCC_ECOLI -
11 PsiBlast_PDB 71.0452% -87 - C3 -2VR1 4.2 ACCC_ECOLI
38 PsiBlast_CBE 71.0352% -88 - C3 -2W6Q - ACCC_ECOLI -
55 PsiBlast_CBE 71.0251% -84 - C3 -3RV4 7.4 ACCC_ECOLI
40 PsiBlast_CBE 71.0152% -85 - C3 -2W6N 5.6 ACCC_ECOLI
35 PsiBlast_CBE 71.0052% -86 - C3 -2W70 3.4 ACCC_ECOLI
41 PsiBlast_CBE 70.9352% -87 - C3 -2W6M - ACCC_ECOLI -
43 PsiBlast_CBE 70.9252% -87 - C3 -2V5A - ACCC_ECOLI -
33 PsiBlast_CBE 70.9252% -87 - C3 -2W71 6.3 ACCC_ECOLI
48 PsiBlast_CBE 70.8952% -86 - C3 -3RV3 8.0 ACCC_ECOLI
57 PsiBlast_CBE 70.8446% -83 - C3 -2VPQ 6.2 ?
49 PsiBlast_CBE 70.8352% -84 - C3 -3RUP 6.8 ACCC_ECOLI
45 PsiBlast_CBE 70.7952% -87 - C3 -2V58 5.6 ACCC_ECOLI
56 PsiBlast_CBE 70.7250% -89 - C3 -4RZQ 4.0 ACCC_HAEIN
130 HHSearch 70.7145% -82 - C3 -3OUZ 7.0 ?
10 PsiBlast_PDB 70.6352% -85 - C3 -2J9G 5.2 ACCC_ECOLI
16 PsiBlast_PDB 70.5852% -84 - C3 -2W6N 5.6 ACCC_ECOLI
13 PsiBlast_PDB 70.5252% -83 - C3 -2V59 5.1 ACCC_ECOLI
14 PsiBlast_PDB 70.4952% -84 - C3 -2V5A 5.3 ACCC_ECOLI
44 PsiBlast_CBE 70.4652% -87 - C3 -2V59 5.3 ACCC_ECOLI
59 PsiBlast_CBE 70.4447% -82 - C3 -2VQD 7.4 ACCC_PSEAE
7 PsiBlast_PDB 70.4452% -82 - C3 -3G8C 3.1 ACCC_ECOLI
28 PsiBlast_CBE 70.4052% -85 - C3 -3G8C 5.9 ACCC_ECOLI
36 PsiBlast_CBE 70.3952% -85 - C3 -2W70 3.7 ACCC_ECOLI
47 PsiBlast_CBE 70.2852% -87 - C3 -3RV3 6.3 ACCC_ECOLI
52 PsiBlast_CBE 70.2751% -85 - C3 -1DV2 5.5 ACCC_ECOLI
50 PsiBlast_CBE 70.2752% -82 - C3 -3RUP 8.2 ACCC_ECOLI
58 PsiBlast_CBE 70.2046% -82 - C3 -2VPQ 6.8 ?
27 PsiBlast_CBE 70.0952% -83 - C3 -3JZF 8.9 ACCC_ECOLI
26 PsiBlast_CBE 70.0952% -82 - C3 -3JZI 8.7 ACCC_ECOLI
12 PsiBlast_PDB 70.0152% -82 - C3 -2V58 5.5 ACCC_ECOLI
53 PsiBlast_CBE 69.9851% -84 - C3 -3G8D 4.4 ACCC_ECOLI
34 PsiBlast_CBE 69.8752% -85 - C3 -2W71 6.4 ACCC_ECOLI
18 PsiBlast_PDB 69.8752% -83 - C3 -2W6P 4.6 ACCC_ECOLI
51 PsiBlast_CBE 69.6251% -80 - C3 -1DV2 3.8 ACCC_ECOLI
128 HHSearch 69.3646% -79 - C3 -2VPQ 6.8 ?
46 PsiBlast_CBE 69.1952% -87 - C3 -2J9G 7.0 ACCC_ECOLI