@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2015: (2016-02-03 )
MTYPSLNFALGETIDMLRDQVRGFVAAELQPRAAQIDQDNQFPMDMWRKFGEMGLLGITVDEEYGGSALGYLAHAVVMEEISRASASVALSYGAHSNLCVNQIKRNGNAEQKARYLPALVSGEHIGALAMSEPNAGSDVVSMKLRADRVGDRFVLNGSKMWITNGPDAHTYVIYAKTDADKGAHGITAFIVERDWKGFSRGPKLDKLGMRGSNTCELIFQDVEVPEENVLGAVNGGVKVLMSGLDYERVVLSGGPVGIMQACMDVVVPYIHDRRQFGQSIGEFQLVQGKVADMYTALNASRAYLYAVAAACDRGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2D29)
?
[Raw transfer]



FAD_K_11(1JQI)
ACADS_RAT
[Raw transfer]



FAD_A_3(2D29)
?
[Raw transfer]



FAD_B_8(4L1F)
?
[Raw transfer]



FAD_B_4(2D29)
?
[Raw transfer]



FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]



FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_B_7(2PG0)
?
[Raw transfer]



FAD_B_5(1UKW)
?
[Raw transfer]



FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_A_3(4L1F)
?
[Raw transfer]



FAD_A_4(1UKW)
?
[Raw transfer]



FAD_A_5(2PG0)
?
[Raw transfer]



FAD_A_4(1UKW)
?
[Raw transfer]



FAD_A_5(2PG0)
?
[Raw transfer]



FAD_D_4(2DVL)
?
[Raw transfer]



FAO_A_4(3P4T)
?
[Raw transfer]
21 PsiBlast_CBE 94.3174%-102 - C2 -4O5M - ? -
2 PsiBlast_PDB 92.4572% -98 - C2 -4KTO - ? -
22 PsiBlast_CBE 91.2774%-101 - C2 -4O5M - ? -
23 PsiBlast_CBE 91.0674%-103 - C2 -4O5M - ? -
24 PsiBlast_CBE 90.6964% -98 - C2 -1IVH - IVD_HUMAN -
1 PsiBlast_PDB 90.2874%-105 - C2 -4O5M - ? -
115 HHSearch 90.2263% -95 - C2 -1IVH - IVD_HUMAN -
3 PsiBlast_PDB 89.8864% -96 - C2 -1IVH - IVD_HUMAN -
25 PsiBlast_CBE 89.2064% -98 - C2 -1IVH - IVD_HUMAN -
26 PsiBlast_CBE 89.0764% -97 - C2 -1IVH - IVD_HUMAN -
104 Fugue 88.5162% -94 - C2 -1IVH - IVD_HUMAN -
59 PsiBlast_CBE 79.0934% -87 - C2 -1EGD - ACADM_HUMAN -
27 PsiBlast_CBE 77.8340% -90 - C2 -1JQI 9.1 ACADS_RAT
4 PsiBlast_PDB 77.2640% -89 - C2 -1JQI 9.2 ACADS_RAT
32 PsiBlast_CBE 76.9840% -88 - C2 -2VIG - ACADS_HUMAN -
29 PsiBlast_CBE 76.9240% -88 - C2 -2VIG - ACADS_HUMAN -
119 HHSearch 76.8940% -87 - C2 -2VIG - ACADS_HUMAN -
5 PsiBlast_PDB 76.8940% -87 - C2 -2VIG - ACADS_HUMAN -
34 PsiBlast_CBE 76.6440% -88 - C2 -2VIG - ACADS_HUMAN -
117 HHSearch 76.3635% -91 - C2 -2JIF - ACDSB_HUMAN -
15 PsiBlast_PDB 75.4038% -92 - C2 -2DVL 8.2 ?
43 PsiBlast_CBE 75.0537% -85 - C2 -1UKW 8.4 ?
6 PsiBlast_PDB 75.0236% -87 - C2 -4L1F 8.3 ?
35 PsiBlast_CBE 74.7936% -88 - C2 -4L1F 6.3 ?
123 HHSearch 74.6036% -86 - C2 -1BUC 8.2 ACDS_MEGEL
57 PsiBlast_CBE 74.1638% -89 - C2 -2DVL 8.7 ?
126 HHSearch 73.1737% -87 - C2 -1UKW 8.9 ?
128 HHSearch 72.8238% -85 - C2 -2D29 8.8 ?
64 PsiBlast_CBE 72.8037% -84 - C2 -1BUC 8.6 ACDS_MEGEL
89 PsiBlast_CBE 72.4635% -90 - C2 -2PG0 8.2 ?
90 PsiBlast_CBE 72.3035% -90 - C2 -2PG0 9.1 ?
91 PsiBlast_CBE 72.2138% -87 - C2 -2D29 7.6 ?
10 PsiBlast_PDB 72.0137% -85 - C2 -1UKW 9.1 ?
18 PsiBlast_PDB 71.6537% -83 - C2 -1BUC 8.2 ACDS_MEGEL
120 HHSearch 71.0635% -86 - C2 -2PG0 9.1 ?
92 PsiBlast_CBE 70.8338% -84 - C2 -2D29 8.8 ?
130 HHSearch 68.2032% -85 - C2 -3P4T 6.7 ?