@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2138: (2016-02-04 )
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHYGAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQSQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTLLPRHGEAATPAARPARRGKSGGKTPMPEWIAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEEGRPDFQALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLAEDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKCQLRQEFVIVGYTEPKGSRRHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRGGIIRQAVFHGLREDKPAREVTGERPAGPPPLRGARKASAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DTP_B_10(2FAR)

[Raw transfer]



ATP_B_10(2FAQ)

[Raw transfer]
49 Fugue 97.42100% -84 - C3 -2FAO - LIGD_PSEAE -
1 PsiBlast_PDB 97.42100% -84 - C3 -2FAO - LIGD_PSEAE -
25 HHSearch 97.22100% -85 - C3 -2FAO - LIGD_PSEAE -
2 PsiBlast_PDB 97.21100% -84 - C3 -2FAQ - LIGD_PSEAE -
3 PsiBlast_PDB 96.35100% -82 - C3 -2FAR - LIGD_PSEAE -
22 PsiBlast_CBE 95.18100% -81 - C3 -2FAQ 6.7
21 PsiBlast_CBE 94.94100% -82 - C3 -2FAR 5.3
23 PsiBlast_CBE 94.51100% -85 - C3 -2FAO - -
31 HHSearch 65.3229% -65 - C1 -2CFM - DNLI_PYRFU -
33 HHSearch 65.2027% -66 - C1 -2HIV - DNLI_SULSO -
17 PsiBlast_PDB 61.9429% -63 - C1 -2CFM - DNLI_PYRFU -
10 PsiBlast_PDB 61.6330% -48 - C1 -3RR5 - ? -
29 HHSearch 61.4426% -61 - C1 -1X9N - DNLI1_HUMAN -
20 PsiBlast_PDB 61.2226% -55 - C1 -2HIX - DNLI_SULSO -
30 HHSearch 60.8726% -64 - C1 -3GDE - DNLI_ARCFU -
19 PsiBlast_PDB 60.6326% -55 - C1 -2HIV - DNLI_SULSO -
18 PsiBlast_PDB 59.4727% -42 - C1 -4EQ5 - ? -
26 HHSearch 59.2326% -57 - C3 -2IRU - LIGD_MYCTU -
13 PsiBlast_PDB 57.9128% -66 - C3 -2IRY - LIGD_MYCTU -
52 Fugue 57.2426% -54 * C3 *2R9L - LIGD_MYCTU -