@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2197: (2016-02-05 )
MSQSTQVNRRIVLASRPHGAPTRDNFRIEQVPLPEPGAGQVLLRTVYLSLDPYMRGRMSDAPSYAPPVELGAVMVGGTVSRVEASNHPGFKVGDWVLSANGWQDYALSDGSGLARLGESPEHPSYALGLLGMPGFTAYMGLLDIGKPQAGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHAVQVLGFDACLDHHAADFAERLAEACPDGIDIYYENVGGKVFDAVFPLLNAKARIPVCGIVAHYNDTELPPGPDRLPALMGTILRKRIKVQGFIIFDDYGHRYDEFQRDMSKWFADGLIQYREERVDGLENAPEAFFGLLQGRNFGKLVVRVGADA

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_5(2J3J)
P1_ARATH
[Raw transfer]




NAP_A_3(4HFN)
DBR_TOBAC
[Raw transfer]




NAP_A_3(2J3K)
P1_ARATH
[Raw transfer]




NAP_A_3(4HFM)
DBR_TOBAC
[Raw transfer]




NAP_B_10(1V3V)
PTGR1_CAVPO
[Raw transfer]




NAP_A_3(2J3I)
P1_ARATH
[Raw transfer]




NAP_B_4(2J3I)
P1_ARATH
[Raw transfer]




NAP_B_5(2J3K)
P1_ARATH
[Raw transfer]




NAP_A_3(2J3J)
P1_ARATH
[Raw transfer]




HC4_A_4(2J3J)
P1_ARATH
[Raw transfer]




5OP_B_12(1V3V)
PTGR1_CAVPO
[Raw transfer]




HC4_B_6(2J3J)
P1_ARATH
[Raw transfer]




5OP_A_11(1V3V)
PTGR1_CAVPO
[Raw transfer]




NCA_A_3(2ZB7)
PTGR2_HUMAN
[Raw transfer]




CIY_A_4(4HFN)
DBR_TOBAC
[Raw transfer]




HNE_B_6(2J3K)
P1_ARATH
[Raw transfer]




HNE_A_4(2J3K)
P1_ARATH
[Raw transfer]




26 PsiBlast_CBE 98.3846%-111 - C2 -4B7X - ? -
33 PsiBlast_CBE 98.2646%-112 - C2 -4B7C - ? -
1 PsiBlast_PDB 97.7946%-111 - C2 -4B7C - ? -
36 PsiBlast_CBE 97.5246%-112 - C2 -4B7C - ? -
34 PsiBlast_CBE 97.3646%-110 - C2 -4B7C - ? -
28 PsiBlast_CBE 97.2846%-105 - C2 -4B7X - ? -
31 PsiBlast_CBE 96.6546%-103 - C2 -4B7X - ? -
21 PsiBlast_CBE 96.6146%-108 - C2 -4B7X - ? -
35 PsiBlast_CBE 96.6046%-112 - C2 -4B7C - ? -
27 PsiBlast_CBE 96.2746%-102 - C2 -4B7X - ? -
30 PsiBlast_CBE 96.2646%-105 - C2 -4B7X - ? -
2 PsiBlast_PDB 96.2246%-101 - C2 -4B7X - ? -
29 PsiBlast_CBE 96.1346%-110 - C2 -4B7X - ? -
25 PsiBlast_CBE 96.0546%-105 - C2 -4B7X - ? -
32 PsiBlast_CBE 95.9146%-110 - C2 -4B7C - ? -
23 PsiBlast_CBE 95.8546%-107 - C2 -4B7X - ? -
11 PsiBlast_PDB 93.3637%-107 - C2 -2ZB8 - PTGR2_HUMAN -
12 PsiBlast_PDB 93.0437%-103 - C2 -2W4Q - PTGR2_HUMAN -
9 PsiBlast_PDB 93.0137%-106 - C2 -2ZB4 - PTGR2_HUMAN -
10 PsiBlast_PDB 92.5137%-104 - C2 -2ZB7 2.7 PTGR2_HUMAN
46 PsiBlast_CBE 87.9838%-103 - C2 -4HFN 6.4 DBR_TOBAC
5 PsiBlast_PDB 87.6941% -96 - C2 -1V3V 3.4 PTGR1_CAVPO
20 PsiBlast_PDB 87.6638%-101 - C2 -4HFM 7.9 DBR_TOBAC
38 PsiBlast_CBE 87.2341% -96 - C2 -1V3V 8.2 PTGR1_CAVPO
45 PsiBlast_CBE 86.5738%-102 - C2 -2J3I 6.9 P1_ARATH
16 PsiBlast_PDB 85.9938% -95 - C2 -2J3I 6.9 P1_ARATH
17 PsiBlast_PDB 85.9738% -92 - C2 -2J3J 7.5 P1_ARATH
43 PsiBlast_CBE 85.9538% -98 - C2 -2J3K 7.0 P1_ARATH
44 PsiBlast_CBE 85.7338% -93 - C2 -2J3J 7.9 P1_ARATH
18 PsiBlast_PDB 84.7738% -94 - C2 -2J3K 7.6 P1_ARATH