@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2250: (2016-02-05 )
MSQILKTSLLIVGGGPGGYVAAIRAGQLGIPTVLVEGAALGGTCLNVGCIPSKALIHAAEEYLKARHYASRSALGIQVQAPSIDIARTVEWKDAIVDRLTSGVAALLKKHGVDVVQGWARILDGKSVAVELAGGGSQRIECEHLLLAAGSQSVELPILPLGGKVISSTEALAPGSLPKRLVVVGGGYIGLELGTAYRKLGVEVAVVEAQPRILPGYDEELTKPVAQALRRLGVELYLGHSLLGPSENGVRVRDGAGEEREIAADQVLVAVGRKPRSEGWNLESLGLDMNGRAVKVDDQCRTSMRNVWAIGDLAGEPMLAHRAMAQGEMVAELIAGKRRQFAPVAIPAVCFTDPEVVVAGLSPEQAKDAGLDCLVASFPFAANGRAMTLEANEGFVRVVARRDNHLVVGWQAVGKAVSELSTAFAQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHI

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_3(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_C_3(1BHY)
?
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




1 PsiBlast_PDB 96.9872%-123 - C1 -1LVL 13.3 DLDH1_PSEPU
92 HHSearch 95.4773%-120 - C1 -1LVL 13.3 DLDH1_PSEPU
34 PsiBlast_CBE 83.3543%-117 - C1 -2EQ6 9.7 ?
32 PsiBlast_CBE 82.7143%-114 - C1 -2EQ8 - ? -
29 PsiBlast_CBE 82.7043%-114 - C1 -2EQ9 - ? -
25 PsiBlast_CBE 82.6643%-114 - C1 -2EQ9 - ? -
26 PsiBlast_CBE 82.5543%-117 - C1 -2EQ9 - ? -
31 PsiBlast_CBE 82.4443%-116 - C1 -2EQ8 - ? -
30 PsiBlast_CBE 82.4043%-116 - C1 -2EQ9 - ? -
5 PsiBlast_PDB 82.3743%-115 - C1 -2EQ6 9.4 ?
33 PsiBlast_CBE 82.2943%-116 - C1 -2EQ8 - ? -
27 PsiBlast_CBE 82.1343%-114 - C1 -2EQ9 - ? -
24 PsiBlast_CBE 82.0643%-115 - C1 -2EQ9 - ? -
21 PsiBlast_CBE 81.9444%-117 - C1 -1EBD 8.7 DLDH1_GEOSE
6 PsiBlast_PDB 81.7443%-116 - C1 -2EQ8 - ? -
28 PsiBlast_CBE 81.5543%-115 - C1 -2EQ9 - ? -
7 PsiBlast_PDB 81.1443%-116 - C1 -2EQ9 - ? -
2 PsiBlast_PDB 81.0644%-117 - C1 -1EBD 11.2 DLDH1_GEOSE
107 HHSearch 80.0245%-117 - C1 -1EBD 11.2 DLDH1_GEOSE
102 HHSearch 79.9644%-111 - C1 -2EQ6 9.4 ?
93 HHSearch 79.1039%-108 * C1 *2QAE 13.1 DLDH_TRYCR
94 HHSearch 78.7440%-110 - C1 -3URH 12.0 ?
109 HHSearch 78.6240%-113 - C1 -2YQU 13.0 ?
44 PsiBlast_CBE 78.0140%-110 - C1 -2YQU 12.3 ?
12 PsiBlast_PDB 77.9740%-111 - C1 -2YQU 13.0 ?
101 HHSearch 77.7637%-106 - C1 -1V59 10.0 DLDH_YEAST
22 PsiBlast_CBE 77.7640%-105 - C1 -3LAD 13.2 DLDH_AZOVI
3 PsiBlast_PDB 77.7340%-110 - C1 -3LAD 11.2 DLDH_AZOVI
43 PsiBlast_CBE 77.1137%-108 - C1 -4JDR 9.6 DLDH_ECOLI
97 HHSearch 77.0641%-111 - C1 -3LAD 11.4 DLDH_AZOVI
95 HHSearch 76.9136%-108 - C1 -1OJT 11.5 ?
9 PsiBlast_PDB 76.8437%-109 - C1 -4JDR 8.6 DLDH_ECOLI
18 PsiBlast_PDB 76.6739%-106 - C1 -3URH 12.0 ?
45 PsiBlast_CBE 76.6540%-108 - C1 -2EQ7 12.9 ?
11 PsiBlast_PDB 76.6340%-108 - C1 -2EQ7 13.0 ?
99 HHSearch 76.1335%-106 - C1 -2A8X 12.0 DLDH_MYCTU
80 PsiBlast_CBE 75.3037%-100 - C1 -1V59 13.3 DLDH_YEAST
23 PsiBlast_CBE 74.7940%-102 - C1 -1LPF 12.8 DLDH_PSEFL
20 PsiBlast_PDB 74.7837%-103 - C1 -1JEH 13.2 DLDH_YEAST
81 PsiBlast_CBE 74.4237%-102 - C1 -1V59 10.0 DLDH_YEAST
82 PsiBlast_CBE 74.2937%-102 - C1 -1JEH 11.9 DLDH_YEAST
79 PsiBlast_CBE 73.9838%-106 - C1 -2QAE 11.9 DLDH_TRYCR
19 PsiBlast_PDB 73.7938%-105 - C1 -2QAE 9.6 DLDH_TRYCR
4 PsiBlast_PDB 73.7540%-104 - C1 -1LPF 12.7 DLDH_PSEFL
88 PsiBlast_CBE 71.8434%-103 - C1 -3II4 11.9 DLDH_MYCTU
90 PsiBlast_CBE 71.0936% -99 - C1 -1BHY 10.2 ?
89 PsiBlast_CBE 70.6036%-100 - C1 -1OJT 10.1 ?