@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2275: (2016-02-06 )
MTLQIRGYAAQSASTPLTAHRFERRAPRADDLVIDILYCGVCHSDLHQARNEWHNSLYPLVPGHEIIGRVASVGEAVSGFAVGELVGVGCMVDSCRHCAACSEGLEQYCAEYPTLTYNGRDRHDGLPTFGGYSERIVVSARFVLRIPQGLDPKAAAPLLCAGITSYSPLRHWKVGPGSRVAVVGLGGLGHMGLKFARALGAEVALFTRSPGKEEEARRLGADQVILSTDPQRMAAVAGRFDLILDTVPHQHDLNPYLATLKRDGTLVLVGLLEPLEPAVHGAQLVMGRRSIAGSAIGGIAETQEMLDFCAAHGIACDIEMIEIQQINQAYERMLASDVKYRFVIDMASLQKSF

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(3TWO)
?
[Raw transfer]



NAP_A_7(1YQD)
?
[Raw transfer]



NAP_B_8(1YQD)
?
[Raw transfer]



NDP_A_3(3TWO)
?
[Raw transfer]



NAP_A_7(1YQX)
?
[Raw transfer]



NDP_B_6(3TWO)
?
[Raw transfer]



NAP_B_8(1YQX)
?
[Raw transfer]



NDP_A_3(4OAQ)
?
[Raw transfer]



NAP_A_4(2CF6)
CADH5_ARATH
[Raw transfer]



NAP_B_8(1PIW)
ADH6_YEAST
[Raw transfer]



ACY_A_8(3JV7)
?
[Raw transfer]



DTT_B_10(1YQD)
?
[Raw transfer]



OCA_B_8(1H2B)
?
[Raw transfer]



OCA_A_3(1H2B)
?
[Raw transfer]



EPE_B_7(4OAQ)
?
[Raw transfer]



DTT_A_4(4OAQ)
?
[Raw transfer]
61 HHSearch 95.5956%-122 - C1 -1UUF - YAHK_ECOLI -
1 PsiBlast_PDB 92.7356%-121 - C1 -1UUF - YAHK_ECOLI -
2 PsiBlast_PDB 89.6248%-121 - C1 -1YQD - ? -
22 PsiBlast_CBE 89.1248%-122 - C1 -1YQD 12.1 ?
3 PsiBlast_PDB 89.0348%-119 - C1 -1YQX 12.8 ?
23 PsiBlast_CBE 87.1442%-121 - C1 -3TWO 12.3 ?
21 PsiBlast_CBE 86.9848%-122 - C1 -1YQX 7.8 ?
4 PsiBlast_PDB 85.7742%-121 - C1 -3TWO 12.2 ?
64 HHSearch 84.2741%-119 - C1 -3TWO 12.2 ?
65 HHSearch 83.5145%-111 - C1 -1YQD 11.4 ?
5 PsiBlast_PDB 82.7944%-121 - C1 -2CF5 - CADH5_ARATH -
6 PsiBlast_PDB 82.1444%-123 - C1 -2CF6 8.0 CADH5_ARATH
60 HHSearch 81.4244%-117 - C1 -2CF5 - CADH5_ARATH -
24 PsiBlast_CBE 75.2137%-111 - C1 -4OAQ 2.2 ?
7 PsiBlast_PDB 74.0037%-109 - C1 -4OAQ 9.1 ?
10 PsiBlast_PDB 72.1736%-122 - C1 -1PS0 - ADH6_YEAST -
11 PsiBlast_PDB 71.5836%-122 - C1 -1Q1N - ADH6_YEAST -
31 PsiBlast_CBE 70.9436%-124 - C1 -1PIW 5.1 ADH6_YEAST
69 HHSearch 70.4335%-114 - C1 -1PIW - ADH6_YEAST -
12 PsiBlast_PDB 69.6836%-120 - C1 -1PIW - ADH6_YEAST -
35 PsiBlast_CBE 60.3431%-116 - C1 -1H2B 2.7 ?
36 PsiBlast_CBE 58.8531%-114 - C1 -1H2B 2.6 ?