@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2300: (2016-02-06 )
MIRIDFSQLHQAREDAAAAMPSIAGKKILMGFWHNWPAGAADGYQQGSFANIALEDVPSEYNVVAVAFMKGRGIPTFQPYNLSDAEFRRQVGVLNAQGRAVLISLGGADAHIELHAGQEQALAAEIVRLVETYGFDGLDIDLEQSAIDLADNQRVLPAALKLVREHYAGQGKHFIVSMAPEFPYLHKNGKYVPYLQALEGVYDFIAPQYYNQGGDGLWVQEANGGKGAWIAQNNDAMKEDFLYYLTESLATGSRDFVRIPAQRLAIGLPSNVDAAATGYVIDPAAVSNAFRRLEAAGHAIKGLMTWSVNWDDGLNKRGERYNWEFRKRYASLIHDGEGGDQRPAAPQGLRLLERGETSLVLAWNASSGQRPIDYYSLYRDGAMVGQSAALGSTDSGLTADTRYSYFVTATDTQGNQSLPSEGLEVSTSGGAVDPQFPQWRENQAYRVDDGVTYEGLRYLCLQAHTSNSGWTPPVAFTLWRPLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_2(4HME)
?
[Raw transfer]
-
SUGAR_A_10(4MB4)
?
[Raw transfer]
-
EDO_A_4(3IAN)
?
[Raw transfer]



EDO_A_4(3IAN)
?
[Raw transfer]



NAG_A_2(4HMD)
?
[Raw transfer]



SUGAR_A_8(4MB5)
?
[Raw transfer]
-
ACY_A_6(3N12)
?
[Raw transfer]



ACY_A_6(3N12)
?
[Raw transfer]



EDO_A_12(3IAN)
?
[Raw transfer]



MPD_A_7(4MB3)
?
[Raw transfer]



CHQ_A_2(3N1A)
?
[Raw transfer]



PEG_A_11(4MB5)
?
[Raw transfer]



IMD_A_8(4MB3)
?
[Raw transfer]



PEG_A_6(3MU7)
?
[Raw transfer]
21 PsiBlast_CBE 97.0971%-110 - C1 -4AXN - ? -
1 PsiBlast_PDB 96.6071%-111 - C1 -4AXN - ? -
8 PsiBlast_PDB 93.4755%-108 - C1 -4MB5 10.9 ?
3 PsiBlast_PDB 92.6355%-108 - C1 -4HMC - ? -
4 PsiBlast_PDB 92.5555%-107 - C1 -4HMD 3.4 ?
5 PsiBlast_PDB 92.0255%-110 - C1 -4HME 6.6 ?
6 PsiBlast_PDB 91.8655%-108 - C1 -4MB3 3.9 ?
7 PsiBlast_PDB 91.8055%-108 - C1 -4MB4 9.8 ?
2 PsiBlast_PDB 90.8658%-106 - C1 -3IAN 3.4 ?
52 HHSearch 85.8258% -93 - C1 -3IAN 3.4 ?
53 HHSearch 71.3431% -99 * C1 *3N12 3.3 ?
9 PsiBlast_PDB 70.9928%-100 - C1 -3N15 - ? -
12 PsiBlast_PDB 70.4227%-100 - C1 -3N17 - ? -
15 PsiBlast_PDB 70.1527% -99 - C1 -3N1A 2.8 ?
10 PsiBlast_PDB 70.0627%-101 - C1 -3N11 - ? -
14 PsiBlast_PDB 69.9127%-100 - C1 -3N18 - ? -
11 PsiBlast_PDB 69.8327%-100 - C1 -3N12 3.3 ?
13 PsiBlast_PDB 68.9527% -98 - C1 -3N13 - ? -
16 PsiBlast_PDB 67.4528% -84 - C1 -3EBV - ? -
54 HHSearch 67.2128%-100 - C1 -3EBV - ? -