@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2308: (2016-02-06 )
MNAASRQPSTLPADALLAVDGVSLEYRTRSRVVRATQRVSFEVDPADRFVLLGPSGCGKSTLLKAVAGFITPSEGEIRLQGQAVRAPGPDRIVVFQEFDQLPPWKTVRQNVLFPLRVSGQVTRDEAERRADECLEKVGLAGFAEAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLRLWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEVHGHPFGLHSLGGEPLQAAARRIHRLLFDEGGEPTAAATLDFADIRLAH

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]
109 Fugue 86.2133%-117 - C1 -1Z47 - ? -
21 PsiBlast_CBE 81.7841%-131 - C1 -1Z47 - ? -
110 Fugue 81.4128%-101 - C1 -1OXS - ? -
119 HHSearch 81.3736%-106 - C1 -1Z47 - ? -
35 PsiBlast_CBE 80.6934%-124 - C1 -3TIF 6.4 Y796_METJA
6 PsiBlast_PDB 80.6238%-118 - C1 -2D62 3.0 ?
2 PsiBlast_PDB 80.2441%-128 - C1 -1Z47 - ? -
26 PsiBlast_CBE 79.0734%-119 - C1 -1L2T 6.7 Y796_METJA
20 PsiBlast_PDB 78.8534%-117 - C1 -3TIF 6.1 Y796_METJA
123 HHSearch 78.6232%-113 - C1 -2IT1 - ? -
12 PsiBlast_PDB 77.9934%-115 - C1 -1L2T 6.6 Y796_METJA
128 HHSearch 77.8637%-117 - C1 -2YYZ - ? -
1 PsiBlast_PDB 77.6641%-130 - C1 -2YYZ - ? -
84 PsiBlast_CBE 77.5532%-129 - C1 -1OXU - ? -
81 PsiBlast_CBE 76.8732%-129 - C1 -1OXV - ? -
37 PsiBlast_CBE 76.6934%-134 - C1 -4KI0 - ? -
82 PsiBlast_CBE 76.1932%-125 - C1 -1OXV - ? -
80 PsiBlast_CBE 76.0632%-130 - C1 -1OXV - ? -
83 PsiBlast_CBE 76.0432%-129 - C1 -1OXU - ? -
111 Fugue 75.9828%-111 - C1 -3TUZ - METN_ECOLI -
78 PsiBlast_CBE 70.8936%-124 - C1 -3FVQ 5.5 FBPC_NEIG1
79 PsiBlast_CBE 70.5336%-126 - C1 -3FVQ 4.7 FBPC_NEIG1
10 PsiBlast_PDB 68.5240%-134 - C1 -4U00 4.2 ?
4 PsiBlast_PDB 67.8837%-142 - C1 -1VCI 2.8 ?
27 PsiBlast_CBE 66.3436%-124 - C1 -4YMV 3.2 ?
16 PsiBlast_PDB 66.0836%-120 - C1 -4YMV 3.6 ?
28 PsiBlast_CBE 66.0536%-125 - C1 -4YMU 4.2 ?
15 PsiBlast_PDB 65.9036%-123 - C1 -4YMU 4.6 ?
71 PsiBlast_CBE 64.7537%-118 - C1 -2OLJ 3.9 ?
61 PsiBlast_CBE 64.2637%-111 - C1 -2Q0H 3.5 ?
66 PsiBlast_CBE 63.6037%-109 - C1 -2OLK 4.0 ?
59 PsiBlast_CBE 63.3837%-112 - C1 -3C4J 4.8 ?
58 PsiBlast_CBE 62.8137%-114 - C1 -3C4J 3.3 ?
68 PsiBlast_CBE 62.6937%-106 - C1 -2OLK 3.8 ?
72 PsiBlast_CBE 62.5137%-112 - C1 -3C41 3.8 ?
60 PsiBlast_CBE 60.7237%-104 - C1 -2Q0H 3.5 ?
73 PsiBlast_CBE 60.7037%-110 - C1 -3C41 5.2 ?
69 PsiBlast_CBE 60.3337%-108 - C1 -2OLK 3.8 ?
67 PsiBlast_CBE 59.4537%-108 - C1 -2OLK 4.1 ?
70 PsiBlast_CBE 58.7837%-108 - C1 -2OLJ 3.6 ?