@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2350: (2016-02-06 )
MTAMTVPPSLLPLEPFPTAPDTRASTPHIRLHGLGKRYPGGVQALREIDLEIRRGEVFGIIGRSGAGKSSLIRTLNRLERPSEGQVLIDDEDIGGYDGQRLVALRRRIGMIFQHFNLMSAKTVRQNIALPLRVAGVPRARIEERVAGLLQLVGLEEKRDAYPAQLSGGQKQRVGIARALVHQPQILLCDEATSALDPESTQAILALLRDINRRLGLTIVLITHEMAVIREICDRVVVLECGRIVEQGEVWEVFGDPRHAVTRSLLGSLRAALPADLQARLRQAPGAGDPVLLDLQYTGASRRVPDLLAIARAIGQRVDLLHGGIERIQGRALGRLLLQVGAPPGELPGVLAKAALVADKVEVLGHVAHA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




3 PsiBlast_PDB 94.0945%-127 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 93.5645%-124 - C1 -3TUI - METN_ECOLI -
120 HHSearch 93.0244%-123 - C1 -3TUI - METN_ECOLI -
24 PsiBlast_CBE 92.7545%-129 - C1 -3TUI - METN_ECOLI -
23 PsiBlast_CBE 92.7145%-123 - C1 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 92.3045%-123 - C1 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 92.0545%-127 - C1 -3TUZ - METN_ECOLI -
110 Fugue 91.9944%-126 - C1 -3TUZ - METN_ECOLI -
25 PsiBlast_CBE 91.4745%-124 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 90.2845%-120 - C1 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 86.0845%-117 - C1 -3DHW - METN_ECOLI -
37 PsiBlast_CBE 74.0643%-123 - C1 -2OLK - ? -
5 PsiBlast_PDB 72.5047%-114 - C1 -4U00 - ? -
36 PsiBlast_CBE 72.2643%-121 - C1 -2OLK - ? -
10 PsiBlast_PDB 72.2343%-126 - C1 -2OUK - ? -
13 PsiBlast_PDB 72.2142%-126 - C1 -4YMS - ? -
17 PsiBlast_PDB 72.1042%-126 - C1 -4YMW - ? -
138 HHSearch 71.8140%-125 - C1 -1B0U - HISP_SALTY -
6 PsiBlast_PDB 71.5347%-116 - C1 -4U02 - ? -
40 PsiBlast_CBE 71.4242%-123 - C1 -4YMV - ? -
55 PsiBlast_CBE 58.6637%-123 - C1 -1L2T 6.8 Y796_METJA
57 PsiBlast_CBE 58.6437%-123 - C1 -3TIF 3.8 Y796_METJA
65 PsiBlast_CBE 55.8639%-106 - C1 -2FGK 5.9 HLYBP_ECOLX
59 PsiBlast_CBE 55.5039%-115 - C1 -2PMK 5.1
63 PsiBlast_CBE 55.3539%-109 - C1 -2FGK 5.3 HLYBP_ECOLX
60 PsiBlast_CBE 55.0239%-112 - C1 -2FF7 5.0
69 PsiBlast_CBE 54.6939%-110 - C1 -2FGJ 5.7 HLYBP_ECOLX
62 PsiBlast_CBE 54.5139%-109 - C1 -2FGK 5.9
66 PsiBlast_CBE 54.2339%-108 - C1 -2FFB 5.1
71 PsiBlast_CBE 54.1339%-108 - C1 -2FGJ 5.6 HLYBP_ECOLX
64 PsiBlast_CBE 54.0039%-110 - C1 -2FGK 6.0 HLYBP_ECOLX
74 PsiBlast_CBE 53.9839%-115 - C1 -1XEF 5.3 HLYBP_ECOLX
68 PsiBlast_CBE 53.8839%-111 - C1 -2FGJ 5.4
76 PsiBlast_CBE 53.7539%-108 - C1 -1XEF 4.8 HLYBP_ECOLX
72 PsiBlast_CBE 53.5639%-108 - C1 -2FFA 5.2
67 PsiBlast_CBE 52.9339%-110 - C1 -3B5J 5.1
75 PsiBlast_CBE 52.2939%-115 - C1 -1XEF 6.0 HLYBP_ECOLX
73 PsiBlast_CBE 51.8839%-112 - C1 -1XEF 5.6
70 PsiBlast_CBE 51.7539%-112 - C1 -2FGJ 6.1 HLYBP_ECOLX