@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2386: (2016-02-07 )
MTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQHLKPGTAARALHEHALAS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(3S5W)
PVDA_PSEAE
[Raw transfer]



FAD_B_8(3S5W)
PVDA_PSEAE
[Raw transfer]



FAD_A_2(4B69)
SIDA_ASPFU
[Raw transfer]



FAD_A_3(4B64)
SIDA_ASPFU
[Raw transfer]



FAD_A_3(3S61)
PVDA_PSEAE
[Raw transfer]



FAD_A_2(4B63)
SIDA_ASPFU
[Raw transfer]



FAD_A_2(4B65)
SIDA_ASPFU
[Raw transfer]



FAD_A_2(4B67)
SIDA_ASPFU
[Raw transfer]



FAD_A_3(4B68)
SIDA_ASPFU
[Raw transfer]



FAD_A_2(4NZH)
SIDA_ASPFU
[Raw transfer]



FAD_B_6(3S61)
PVDA_PSEAE
[Raw transfer]



FAD_A_3(4B66)
SIDA_ASPFU
[Raw transfer]



ARG_A_2(4B68)
SIDA_ASPFU
[Raw transfer]



ARG_A_2(4B66)
SIDA_ASPFU
[Raw transfer]
60 Fugue 98.7799%-112 - C6 -3S5W 13.5 PVDA_PSEAE
22 PsiBlast_CBE 98.74100%-111 - C6 -3S5W 13.5 PVDA_PSEAE
1 PsiBlast_PDB 98.29100%-113 - C6 -3S61 12.3 PVDA_PSEAE
21 PsiBlast_CBE 96.67100%-109 - C6 -3S61 12.7 PVDA_PSEAE
3 PsiBlast_PDB 78.3538% -96 - C6 -4B64 12.8 SIDA_ASPFU
5 PsiBlast_PDB 78.3138% -97 - C6 -4B66 11.6 SIDA_ASPFU
9 PsiBlast_PDB 78.3038% -99 - C6 -4NZH 12.7 SIDA_ASPFU
8 PsiBlast_PDB 78.0438% -97 - C6 -4B69 12.5 SIDA_ASPFU
2 PsiBlast_PDB 77.8138% -96 - C6 -4B63 12.9 SIDA_ASPFU
6 PsiBlast_PDB 77.6738% -93 - C6 -4B67 12.6 SIDA_ASPFU
4 PsiBlast_PDB 77.5538% -97 - C6 -4B65 12.5 SIDA_ASPFU
7 PsiBlast_PDB 75.9238% -93 - C6 -4B68 12.7 SIDA_ASPFU
14 PsiBlast_PDB 75.1034% -88 - C6 -4TM3 - ? -
26 PsiBlast_CBE 74.9834% -87 - C6 -4TM3 - ? -
23 PsiBlast_CBE 74.6834% -87 - C6 -4TM4 - ? -
13 PsiBlast_PDB 74.5734% -87 - C6 -4TM1 - ? -
25 PsiBlast_CBE 74.5234% -87 - C6 -4TM4 - ? -
30 PsiBlast_CBE 74.5134% -88 - C6 -4TM1 - ? -
37 PsiBlast_CBE 74.5034% -86 - C6 -4TLZ - ? -
24 PsiBlast_CBE 74.4934% -87 - C6 -4TM4 - ? -