@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2390: (2016-02-07 )
MENATQPVPLIELRDIRKRYGGNGTPEVEVLKGVSLSIHAGEFVAIVGASGSGKSTLMNILGCLDRPSSGSYHFAGHDVAELDSDEQAWLRREAFGFVFQGYHLIPSASAQENVEMPAIYAGIPASERHTRARALLERLGLAERTANRPHQLSGGQQQRVSIARALMNGGHIILADEPTGALDSHSGAEVMALLDELASQGHVVILITHDRDVAARAKRIIEVRDGEIVSDSANDERPAHPSAGVERHLQADDLSQRLAEGSSEPSGAWRAELLEAVRAAWRVMWINRFRTALTLLGIIIGVASVVVMLAVGEGSKRQVMAQMGAFGSNIIYLSGYSPNPRAPMGIVSSDDVAAIATLPQVKKVMPVNGGELVVRYGNIDYHAYVGGNNTDFPEILNWPVAEGSYFTERDEDAATTVAVIGYKVRKKLFGSANPIGRYILIENVPFQVIGVLAEKGSSSGDKDADNRIAIPYSAASIRLFGTRNPEYVIIAAADAQRVHQAERAIDQLMLRLHRGQRDYELTNNAAMIQAEAKTQNTLSLMLGSIAAISLLVGGIGVMNIMLMTVRERTREIGIRMATGARQGDILRQFLTEAAMLSVVGGLAGIALALCIGGVLLLGQVAVAFSLSAIVGAFSCALVTGLVFGFMPARKAAQLDPVAALASQ

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




21 PsiBlast_CBE 86.9148%-101 - C3 -1L2T 6.8 Y796_METJA
2 PsiBlast_PDB 85.9147%-102 - C3 -3TIF - Y796_METJA -
3 PsiBlast_PDB 85.9048% -95 - C3 -1F3O 5.3 Y796_METJA
1 PsiBlast_PDB 84.8648%-101 - C3 -1L2T - Y796_METJA -
22 PsiBlast_CBE 84.8047%-105 - C3 -3TIF 6.4 Y796_METJA
127 HHSearch 83.4446% -93 - C3 -3TIF - Y796_METJA -
129 Fugue 81.5028% -92 - C3 -3TUZ - METN_ECOLI -
123 HHSearch 80.2243% -92 - C3 -2PCJ - LOLD_AQUAE -
4 PsiBlast_PDB 75.3245% -88 - C3 -2PCJ - LOLD_AQUAE -
8 PsiBlast_PDB 74.9134% -84 - C3 -3TUZ - METN_ECOLI -
7 PsiBlast_PDB 74.7034% -82 - C3 -3TUI - METN_ECOLI -
5 PsiBlast_PDB 73.7445% -90 - C3 -2PCL - LOLD_AQUAE -
12 PsiBlast_PDB 73.2735% -90 - C3 -4YMV 6.0 ?
112 HHSearch 73.1333% -85 - C3 -3TUI - METN_ECOLI -
30 PsiBlast_CBE 72.3935% -93 - C3 -4YMV 5.2 ?
15 PsiBlast_PDB 72.2835% -74 - C3 -2IT1 - ? -
16 PsiBlast_PDB 72.2036% -85 - C3 -4U00 6.1 ?
17 PsiBlast_PDB 71.5636% -84 - C3 -4U02 - ? -
32 PsiBlast_CBE 71.0835% -78 - C3 -2IT1 - ? -
13 PsiBlast_PDB 70.9635% -92 - C3 -4YMW - ? -
45 PsiBlast_CBE 70.9033% -90 - C3 -2OLK 6.3 ?
11 PsiBlast_PDB 70.8835% -91 - C3 -4YMU 5.8 ?
37 PsiBlast_CBE 70.8133% -96 - C3 -3C4J 5.3 ?
31 PsiBlast_CBE 70.6435% -93 - C3 -4YMU 5.9 ?
51 PsiBlast_CBE 70.1036% -79 - C3 -1B0U 6.0 HISP_SALTY
19 PsiBlast_PDB 70.0533% -95 - C3 -2OLJ 5.9 ?
39 PsiBlast_CBE 69.8933% -91 - C3 -2Q0H 6.1 ?
47 PsiBlast_CBE 69.5333% -92 - C3 -2OLK 6.3 ?
46 PsiBlast_CBE 69.1833% -88 - C3 -2OLK 6.2 ?
20 PsiBlast_PDB 69.1833% -89 - C3 -2OLK 6.2 ?
40 PsiBlast_CBE 68.6333% -88 - C3 -2Q0H 5.6 ?
36 PsiBlast_CBE 68.1533% -89 - C3 -3C41 6.0 ?
48 PsiBlast_CBE 67.8833% -84 - C3 -2OLJ 5.8 ?
38 PsiBlast_CBE 67.7533% -87 - C3 -3C4J 6.8 ?
18 PsiBlast_PDB 67.5633% -85 - C3 -3C41 6.6 ?
61 PsiBlast_CBE 66.5935% -69 - C3 -2FF7 5.9
63 PsiBlast_CBE 65.3135% -71 - C3 -2PMK 6.7
68 PsiBlast_CBE 65.1434% -72 - C3 -2FGK 7.1 HLYBP_ECOLX
69 PsiBlast_CBE 65.0834% -67 - C3 -2FFB 5.9
65 PsiBlast_CBE 63.8734% -69 - C3 -2FGK 6.8
67 PsiBlast_CBE 63.8034% -68 - C3 -2FGK 6.8 HLYBP_ECOLX
66 PsiBlast_CBE 63.2734% -71 - C3 -2FGK 6.3 HLYBP_ECOLX
53 PsiBlast_CBE 58.7631% -82 - C3 -1VCI 4.0 ?