@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2398: (2016-02-07 )
MPAPHGLSPLSKAFLMRRAFQRRILPHSLAMALSLPLAGYVQAQEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LDA_A_8(1XKW)
FPTA_PSEAE
[Raw transfer]
3 PsiBlast_PDB 88.66100% -23 - C6 -2W16 - FPVA_PSEAE -
2 PsiBlast_PDB 88.63100% -21 - C6 -2O5P - FPVA_PSEAE -
23 PsiBlast_CBE 88.59100% -26 - C6 -2W76 - FPVA_PSEAE -
22 PsiBlast_CBE 88.56100% -26 - C6 -2W77 - FPVA_PSEAE -
6 PsiBlast_PDB 88.54100% -24 - C6 -2W75 - FPVA_PSEAE -
28 PsiBlast_CBE 88.20100% -26 - C6 -2O5P - FPVA_PSEAE -
4 PsiBlast_PDB 88.18100% -22 - C6 -2W6T - FPVA_PSEAE -
27 PsiBlast_CBE 88.15100% -24 - C6 -2W16 - FPVA_PSEAE -
9 PsiBlast_PDB 88.08100% -22 - C6 -2W78 - FPVA_PSEAE -
5 PsiBlast_PDB 88.05100% -20 - C6 -2W6U - FPVA_PSEAE -
24 PsiBlast_CBE 88.02100% -26 - C6 -2W75 - FPVA_PSEAE -
8 PsiBlast_PDB 87.98100% -21 - C6 -2W77 - FPVA_PSEAE -
26 PsiBlast_CBE 87.89100% -25 - C6 -2W6T - FPVA_PSEAE -
7 PsiBlast_PDB 87.74100% -22 - C6 -2W76 - FPVA_PSEAE -
21 PsiBlast_CBE 87.57100% -24 - C6 -2W78 - FPVA_PSEAE -
25 PsiBlast_CBE 87.43100% -24 - C6 -2W6U - FPVA_PSEAE -
1 PsiBlast_PDB 87.27100% -27 - C6 -2IAH - FPVA_PSEAE -
51 Fugue 87.2399% -27 - C6 -2IAH - FPVA_PSEAE -
29 HHSearch 86.9798% -23 - C6 -2W16 - FPVA_PSEAE -
10 PsiBlast_PDB 80.0798% -17 - C6 -1XKH - FPVA_PSEAE -
11 PsiBlast_PDB 59.6834% -7 - C6 -1XKW 4.3 FPTA_PSEAE