@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2516: (2016-02-08 )
MNHRIALNFEDGVTRFIHAAPGETVADAAYRQGINIPLDCRDGACGTCKCLAEAGRYALGQDYIDDALSAEEAARGYVLTCQMRAESDCVLRVPASSTLCRTGQARYEARISEVRQLSPSTIGLSLRGEALASLAFLPGQYVNLQVPGSEQRRAYSFSSLAKDGEVSFLIRNVPGGLMSGFLSGTARAGDSLAMDGPLGSFYLREIHRPLLMLAGGTGLAPFTAMLERIAEQGSAHPLHLVYGVTHDVDLVGLERLEAFAERIPGFTWSACVASADSDYPRKGYVTEHIAAQHLHEGDVDIYLCGPPPMVEAVERYLREQGVRPANFYYEKFAASAA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_11(1KRH)
BENC_ACIAD
[Raw transfer]




FAD_A_9(1KRH)
BENC_ACIAD
[Raw transfer]




FES_A_8(1KRH)
BENC_ACIAD
[Raw transfer]




GOL_A_6(3W5H)
NB5R3_PIG
[Raw transfer]




HEM_B_3(3OZV)
HMP_CUPNH
[Raw transfer]




HEM_A_3(3OZW)
HMP_CUPNH
[Raw transfer]




GOL_B_11(2EIX)
?
[Raw transfer]




85 HHSearch 93.5553%-131 - C2 -1KRH 12.9 BENC_ACIAD
1 PsiBlast_PDB 93.4352%-133 - C2 -1KRH 3.6 BENC_ACIAD
21 PsiBlast_CBE 92.9052%-131 - C2 -1KRH 12.7 BENC_ACIAD
10 PsiBlast_PDB 63.5921%-111 - C2 -4P6V - NQRF_VIBCH -
89 HHSearch 62.5821%-123 * C2 *2R6H - ? -
2 PsiBlast_PDB 60.8329% -95 - C2 -4WQM - ? -
103 HHSearch 60.7425%-128 - C2 -2RC5 - ? -
104 HHSearch 59.0224%-127 - C2 -2BMW - FENR_NOSSO -
101 HHSearch 58.7023%-118 - C2 -3VO2 - ? -
94 HHSearch 58.4720%-136 - C2 -3JQQ - ? -
100 HHSearch 56.2624%-130 - C2 -3W5H 3.0 NB5R3_PIG
93 HHSearch 55.9923%-121 - C2 -1CQX - HMP_CUPNH -
99 HHSearch 55.9623%-125 - C2 -2CND - -
5 PsiBlast_PDB 55.8627%-102 - C2 -3OZW 3.5 HMP_CUPNH
13 PsiBlast_PDB 55.5924%-146 - C2 -2EIX - ? -
87 HHSearch 54.9521%-117 - C2 -1QFJ - FRE_ECOLI -
3 PsiBlast_PDB 54.9227% -99 - C2 -3OZU - HMP_CUPNH -
102 HHSearch 54.8222%-106 - C2 -2B5O - FENR_SYNP2 -
9 PsiBlast_PDB 54.8027%-119 - C2 -4EH1 - HMP_VIBCH -
6 PsiBlast_PDB 54.4927%-101 - C2 -1CQX - HMP_CUPNH -